View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_16 (Length: 541)
Name: NF15163_low_16
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Original strand, 36292972 - 36293472
Alignment:
| Q |
7 |
gcagcacagagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctga |
106 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36292972 |
gcagcactgagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctga |
36293071 |
T |
|
| Q |
107 |
cagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293072 |
cagaccctgccaaaggagttgacggagtttttgaaaaggcatacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgt |
36293171 |
T |
|
| Q |
207 |
caatccaaaggtattttcataattcatattgcctaatttggttgataggttgaaaaaagtttagtcgattaatttgtcaatttttagactcattatgaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293172 |
caatccaaaggtattttcataattcatattgcctaatttggttgataggttgaaaaaagtttagtcgattaatttgtcaatttttagactcattatgaga |
36293271 |
T |
|
| Q |
307 |
ccacaggccctgagatttggagagacactggagagagaattgatgctttggttgcagggataggaactgggggaacaataacaggtgctgggaagttcct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293272 |
ccacaggccctgagatttggagagacactggagagagaattgatgctttggttgcagggataggaactgggggaacaataacaggtgctgggaagttcct |
36293371 |
T |
|
| Q |
407 |
caaggagagaaacttagatatcaaggttaatttgtttaccttgtatactttttgtgttgggagtgaatatgtgaacaagttttcttagttcatgctatat |
506 |
Q |
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| T |
36293372 |
caaggagagaaacttagatatcaaggttaatttgtttaccttgtatactttttgtgttgggagtgaatatgtgaacaagttttcttagttcatgctatat |
36293471 |
T |
|
| Q |
507 |
a |
507 |
Q |
| |
|
| |
|
|
| T |
36293472 |
a |
36293472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 6 - 433
Target Start/End: Original strand, 36281483 - 36281913
Alignment:
| Q |
6 |
agcagcacagagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctg |
105 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||| || | |||||||||| |||||||||||| || | ||||||||||||||||||||| || |
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|
| T |
36281483 |
agcagcaatgaggggctataaacttttagtgactatgccagctactatgagtcttgaaagaaaaattatactgcgagctttcggagccgaggtatatttg |
36281582 |
T |
|
| Q |
106 |
acagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctg |
205 |
Q |
| |
|
|||||||||||||||||| |||| || |||||| | || ||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| |
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|
| T |
36281583 |
acagaccctgccaaaggaattgatggtgtttttcagaaagcagacgagctattagcgaagacgcctaatagttataagctcaatcagtttgaaaactctg |
36281682 |
T |
|
| Q |
206 |
tcaatccaaaggtattttcataattcatattgcctaatttggttgataggttg--aaaaaagtttagtcgattaatttgtcaat-ttttagactcattat |
302 |
Q |
| |
|
|||||||||||| || ||| | |||||||| |||||||||||| | ||| | |||||| | || | ||||||||||| | ||||||| |||||| |
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|
| T |
36281683 |
ccaatccaaaggtgttatcacagttcatattttctaatttggttgtttggtgggaaaaaaattgtaaccaattaatttgtcgttgttttagattcattac |
36281782 |
T |
|
| Q |
303 |
gagaccacaggccctgagatttggagagacactggagagagaattgatgctttggttgcagggataggaactgggggaacaataacaggtgctgggaagt |
402 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |
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|
| T |
36281783 |
gagaccactggccctgagatttggaaagactctggagggagagttgatgctttggttgcaggaataggaactgggggaacagtaacaggtactgggaagt |
36281882 |
T |
|
| Q |
403 |
tcctcaaggagagaaacttagatatcaaggt |
433 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| |
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|
| T |
36281883 |
tccttaaggagaaaaatccagatatcaaggt |
36281913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 6 - 433
Target Start/End: Original strand, 36287422 - 36287853
Alignment:
| Q |
6 |
agcagcacagagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctg |
105 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | |||||| || ||||||||||||||||| |||| || | | ||||| ||||| ||||||||||| |
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|
| T |
36287422 |
agcagcaatgaggggctataaacttttagtgtcattgccattttatgtgagtcttgagagaagaattctactcagagcttttggagctgaggtatatcta |
36287521 |
T |
|
| Q |
106 |
acagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctg |
205 |
Q |
| |
|
||||| |||||||||||| | || || |||||||| || || || |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36287522 |
acagatcctgccaaaggaatagatggtgtttttgagaaagcggaagagctattagagaagacgcctaatagttatatgttcaatcaatttgaaaatcctg |
36287621 |
T |
|
| Q |
206 |
tcaatccaaaggtattttcataattcatattgcctaatttggttgataggttg--aaaaaagtttagtcgattaatttgtcaat--ttttagactcatta |
301 |
Q |
| |
|
|||||| |||||||| |||| ||| ||||| |||||| ||||| || ||| |||||| | || | ||||||| ||| | ||||||| |||||| |
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|
| T |
36287622 |
ccaatccgaaggtattgtcattatttatatttcctaatatggtttatgaattggaaaaaaaactgagccaattaattggtcgttacttttagattcatta |
36287721 |
T |
|
| Q |
302 |
tgagaccacaggccctgagatttggagagacactggagagagaattgatgctttggttgcagggataggaactgggggaacaataacaggtgctgggaag |
401 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
36287722 |
tgagaccactggccctgagatttggagagacactggagggagaattgatgctttggttgcagggataggaactggaggaacaataacaggtgttgggaag |
36287821 |
T |
|
| Q |
402 |
ttcctcaaggagagaaacttagatatcaaggt |
433 |
Q |
| |
|
||||| ||||||| |||| ||| |||||||| |
|
|
| T |
36287822 |
ttccttaaggagaaaaacccagagatcaaggt |
36287853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 27289116 - 27289075
Alignment:
| Q |
378 |
ggaacaataacaggtgctgggaagttcctcaaggagagaaac |
419 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
27289116 |
ggaacaataacaggtgcagggaaattcctcaaggagagaaac |
27289075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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