View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_low_22 (Length: 493)
Name: NF15163_low_22
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_22 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 101 - 493
Target Start/End: Complemental strand, 6368027 - 6367636
Alignment:
| Q |
101 |
caaataagttttagaatttataaacgcggcatcagattctatctgttttcacaaaaagaaattcaacaaatatcttataatatccaattttgttgcatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6368027 |
caaataagttttagaatttataaacgcggcatcagattctatctgttttcacaaaaagaaattcaacaaatatcttataatatccaattttgttgcatag |
6367928 |
T |
|
| Q |
201 |
gttttagttttttaaattgatttggagatattaacacttctacccatcttggatcatctctctcaacaccttccatcctttgtcacaatctcatgccgcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6367927 |
gttttagttttttaaattgatttggagatgttaacacttctacccatcttggatcatctctctcaacaccttccatcctttgtcacaatctcatgccgcc |
6367828 |
T |
|
| Q |
301 |
ttttttgttttagcaaaatctcatgccacttatcttactcgaaatctagtatattacatgtatatgaaacacagcgctattgacactcgaaactcaaaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
6367827 |
ttttttgttttagcaaaatctcatgccactt-tcttactcgaaatctagtatattgcatgtatatgaaacacatctctattgacactggaaactcaaaat |
6367729 |
T |
|
| Q |
401 |
tcaacatgttagccctatagatcaattaacagattgtctcacaaaacctctctcaaaagttcacggtcaccgttgcgaaagaagatggagttt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6367728 |
tcaacatgttagccctatagatcaattaacagattgtctcacaaaacctctctcaaaagttcacggtcaccgttgcgaaagaagatggagttt |
6367636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 6517290 - 6517220
Alignment:
| Q |
389 |
gaaactcaaaagtcaacatgttagccctatagatcaattaacagattgtctcacaaaacctctctcaaaag |
459 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6517290 |
gaaactcaaaattcagcatgtcagcactactgatcaattagcagattgtctcacaaaacctctctcaaaag |
6517220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 5403039 - 5403109
Alignment:
| Q |
389 |
gaaactcaaaagtcaacatgttagccctatagatcaattaacagattgtctcacaaaacctctctcaaaag |
459 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5403039 |
gaaactcaaaattcagcatgtcagcactactgatcaattagcagattgtctcacaaaacctctctcaaaag |
5403109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 3544026 - 3544096
Alignment:
| Q |
389 |
gaaactcaaaagtcaacatgttagccctatagatcaattaacagattgtctcacaaaacctctctcaaaag |
459 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3544026 |
gaaactcaaaattcagcatgtcagcactactgatcaattagcagattgtctcacaaaacctctctcaaaag |
3544096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 34695738 - 34695668
Alignment:
| Q |
389 |
gaaactcaaaagtcaacatgttagccctatagatcaattaacagattgtctcacaaaacctctctcaaaag |
459 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34695738 |
gaaactcaaaattcagcatgtcagcactactgatcaattagcagattgtctcacaaaacctctctcaaaag |
34695668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University