View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_23 (Length: 483)

Name: NF15163_low_23
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_23
NF15163_low_23
[»] chr4 (17 HSPs)
chr4 (49-292)||(7051417-7051660)
chr4 (1-184)||(7001161-7001344)
chr4 (6-184)||(7011254-7011432)
chr4 (18-184)||(7037687-7037853)
chr4 (27-193)||(7044435-7044600)
chr4 (27-184)||(7018898-7019055)
chr4 (27-193)||(6992536-6992702)
chr4 (359-465)||(7051251-7051357)
chr4 (27-184)||(7025866-7026023)
chr4 (359-465)||(7025267-7025373)
chr4 (359-465)||(7000982-7001088)
chr4 (359-465)||(6992182-6992288)
chr4 (380-465)||(7009969-7010054)
chr4 (377-465)||(7036593-7036681)
chr4 (359-454)||(7018017-7018113)
chr4 (380-465)||(7044259-7044344)
chr4 (209-288)||(7025496-7025575)
[»] chr3 (1 HSPs)
chr3 (27-115)||(46185215-46185303)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 49 - 292
Target Start/End: Complemental strand, 7051660 - 7051417
Alignment:
Q  49 cagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatttgctgacttaacaaaataatagaacacttgcat 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7051660 cagaaaaagaagaacagccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaacaaaataatagaacacttgcat 7051561  T
Q  149 gtcatcatctgtttcccctaaccccacgtacctatcgaaaatatacacagccatttattttgttatttgaacatctaaaaattaccgatgtatttgacgc 248  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7051560 gtcgtcatctgtttcccctaaccccaagtacctatcgaaaatatacacagccatttattttgttatttgaacatctaaaaattacggatgtatttgacgc 7051461  T
Q  249 catataaaaacatatcatattataattattgatttaactcaatg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7051460 catataaaaacatatcatattataattattgatttaactcaatg 7051417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 7001344 - 7001161
Alignment:
Q  1 aaaacaataaagttgtaatttaaaatttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatc 100  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7001344 aaaacaataaagttgtaatttgaaaattacctatttgatagaaaagggcagaaaaagaagaacaaccaggacctccagataaccaaagcataagaggatc 7001245  T
Q  101 tttctgaggattatttgctgacttaacaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc 184  Q
    ||||||||||||| || |||| || ||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||    
T  7001244 tttctgaggattactttctgatttgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatc 7001161  T

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Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 7011432 - 7011254
Alignment:
Q  6 aataaagttgtaatttaaaatttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttct 105  Q
    |||||| ||||||||| ||| |||||||||||||||| |||| |||||| |||||| |||||||||||||||| || |||||||||||||||||||||||    
T  7011432 aataaatttgtaatttgaaaattacctatttgatagagaaggccagaaatagaagagcaaccaggaccaccagttatccaaagcataagaggatctttct 7011333  T
Q  106 gaggattatttgctgacttaacaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc 184  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||    
T  7011332 gaggattactttctgactttacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatc 7011254  T

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Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 7037853 - 7037687
Alignment:
Q  18 atttaaaatttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatttg 117  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||     
T  7037853 atttaaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttctgaggattatttt 7037754  T
Q  118 ctgacttaacaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc 184  Q
    ||||||| | ||||||||||||||||||||||||||||| || ||| || |||||||| ||||||||    
T  7037753 ctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatc 7037687  T

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Target: chr4; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 7044600 - 7044435
Alignment:
Q  27 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatttgctgacttaa 126  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||| || |    
T  7044600 ttacctatttgataggcaagggcagaaaaagaagaacaaccaggaccaccagatatccaaagcataagagggtctttcttaggattattttctgatttga 7044501  T
Q  127 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcgaaaatata 193  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||    
T  7044500 caaaataatagaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatc-aaaatata 7044435  T

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Target: chr4; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 7019055 - 7018898
Alignment:
Q  27 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatttgctgacttaa 126  Q
    ||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||| ||||||| |    
T  7019055 ttacctatttgatgggcaaggccagaaaaagaagaacaaccaggaccaccagataaccaaagaattagagggtctttttgaggattattttctgacttta 7018956  T
Q  127 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc 184  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  7018955 caaaataataaaacacttgcatgtcatcatctgtttcccctaatcccacgtacctatc 7018898  T

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Target: chr4; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 6992702 - 6992536
Alignment:
Q  27 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatttgctgacttaa 126  Q
    |||||||||||||||  |||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||  ||| |||| || |    
T  6992702 ttacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttttgaggatcgttttctgatttga 6992603  T
Q  127 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcgaaaatata 193  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  6992602 taaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatatata 6992536  T

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Target: chr4; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 7051357 - 7051251
Alignment:
Q  359 ggaatgattatgattgctctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccggaagcttcaagagg 458  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7051357 ggaatgattaggattgccctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccagaagcttcaagagg 7051258  T
Q  459 agttaac 465  Q
    |||||||    
T  7051257 agttaac 7051251  T

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Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 7026023 - 7025866
Alignment:
Q  27 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatttgctgacttaa 126  Q
    |||||||||| ||| | |||  |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| |    
T  7026023 ttacctatttcatacacaagtccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctgaggattattttctgacttta 7025924  T
Q  127 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc 184  Q
    ||||||| || ||||||||||||||||||| ||  || ||||||||||||||||||||    
T  7025923 caaaatagtaaaacacttgcatgtcatcatttgaatctcctaaccccacgtacctatc 7025866  T

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Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 7025373 - 7025267
Alignment:
Q  359 ggaatgattatgattgctctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccggaagcttcaagagg 458  Q
    |||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||||||    
T  7025373 ggaatgattaggattgccctcaccccgtttcaagttcaaaagggagtggcccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagagg 7025274  T
Q  459 agttaac 465  Q
    |||||||    
T  7025273 agttaac 7025267  T

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Target: chr4; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 7001088 - 7000982
Alignment:
Q  359 ggaatgattatgattgctctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccggaagcttcaagagg 458  Q
    |||||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||||||||| ||||||||  |||||||  |||||||||||||    
T  7001088 ggaatgattaggattgctctcaccctgtttcaagttcaaaaggaagtggaccttgaaaaccaggaagctgttcaacctttgagccataagcttcaagagg 7000989  T
Q  459 agttaac 465  Q
    |||||||    
T  7000988 agttaac 7000982  T

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Target: chr4; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 6992288 - 6992182
Alignment:
Q  359 ggaatgattatgattgctctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccggaagcttcaagagg 458  Q
    |||||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||||||||| ||||||||  |||||||  ||||||||| | |    
T  6992288 ggaatgattaagattgctctcacccagtttcaagttcaaaaggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatg 6992189  T
Q  459 agttaac 465  Q
    |||||||    
T  6992188 agttaac 6992182  T

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Target: chr4; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 7010054 - 7009969
Alignment:
Q  380 accccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccggaagcttcaagaggagttaac 465  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| ||||||||  |||||||  ||||||||||||||||||||    
T  7010054 acccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaagaggagttaac 7009969  T

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Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 465
Target Start/End: Complemental strand, 7036681 - 7036593
Alignment:
Q  377 ctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccggaagcttcaagaggagttaac 465  Q
    ||||||| |||||||||| |||||| || || ||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  7036681 ctcaccctgtttcaagttgaaaaggaagaggtccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagaggagttaac 7036593  T

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Target: chr4; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 7018113 - 7018017
Alignment:
Q  359 ggaatgattatgattgctctcaccccgtttcaagttcaaaagggagcggcccttg-aaaaccaggaaggtgttcaactcttgagccggaagcttcaa 454  Q
    |||||||||| ||||| |||||||||||||||||||||||||| || || ||||| |||||||||||| ||||||||  |||||||  |||||||||    
T  7018113 ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagtggtccttgaaaaaccaggaagctgttcaacctttgagccataagcttcaa 7018017  T

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Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 7044344 - 7044259
Alignment:
Q  380 accccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccggaagcttcaagaggagttaac 465  Q
    |||| |||||||||||||| || || || ||||||||||||||||| ||||||||  ||||||  |||||||||||||||||||||    
T  7044344 accctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagcgagaagcttcaagaggagttaac 7044259  T

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Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 7025575 - 7025496
Alignment:
Q  209 tgttatttgaacatctaaaaattaccgatgtatttgacgccatataaaaacatatcatattataattattgatttaactc 288  Q
    ||||||||||||||||||| |||||  | |||||| ||  ||||||||||||||||||||||||| | ||||||| ||||    
T  7025575 tgttatttgaacatctaaatattactaaggtatttcacatcatataaaaacatatcatattataactgttgatttgactc 7025496  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 46185215 - 46185303
Alignment:
Q  27 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatt 115  Q
    |||||||||| | ||  |||| ||||||||| ||| |||||||||||||||| |||||||||||  ||||||||||  | |||||||||    
T  46185215 ttacctatttcaaaggcaaggccagaaaaagcagagcaaccaggaccaccagttaaccaaagcaagagaggatcttgtttaggattatt 46185303  T

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