View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_26 (Length: 464)
Name: NF15163_low_26
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 53298353 - 53298779
Alignment:
| Q |
18 |
gataaatctcatgaaccatttctaaagtctttaaggtcctaattttaaccatattttgggggannnnnnnnncttttctttccccttgtttattcccttt |
117 |
Q |
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| T |
53298353 |
gataaatctcatgaaccatttctaaagtcattaaggtcctaattttaaccatattttggggga-----------ttttttttcccttgtttattccgttt |
53298441 |
T |
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| Q |
118 |
taaataggctttgagttgtaaatgggttgagtacctcacgtaatcttatttctaattgaaatatctttgcagtgataaaaattaataaatcaaataaata |
217 |
Q |
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| T |
53298442 |
taaataggctttgagttgtaaatgggttgagtacctcacgtaatcttatttctaattgaaatatctttgcagtgataaaaattaataaatcaaataaata |
53298541 |
T |
|
| Q |
218 |
ttcattagtaccc----accatttgaaaaacatgagatttgtgaacttttatttaaagcttgttgttgggtgtgcattttaggtcaatgtagtgctcatt |
313 |
Q |
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| T |
53298542 |
ttcattagtacccacccaccatttgaaaaacatgagatttttttacttttatttaaagcttgttgtggggtgtgcattttaggtcaatgtagtgctcatt |
53298641 |
T |
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| Q |
314 |
taatttcgaaatatttcttcgctgtcgtgttggctcaagtttgcaagaacactgctaatcattatcccagtatatttcatcaatataagcaacatactgg |
413 |
Q |
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| T |
53298642 |
taatttcgaaatatttcttcgctgtcgtgttggctcaagtttgcaagaacactactaatcattatcccagtatatttcatcaatgtaagcaacatactgg |
53298741 |
T |
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| Q |
414 |
tatctcattgatcctagctggggtcatatattgatatt |
451 |
Q |
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| T |
53298742 |
tatctcattgatcctagctggggtcatatattgatatt |
53298779 |
T |
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