View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_29 (Length: 447)
Name: NF15163_low_29
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 19370764 - 19370318
Alignment:
| Q |
1 |
atattatgtttaagcaacttcataacgtcgagcatctgcgcctacatgtggtatgtatatatatttatcaaatttacaaaatactagcaaattacattag |
100 |
Q |
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| T |
19370764 |
atattatgtttaagcaacttcataacgtggagcatctgcgcctacatgtggtatgtatatatatttatcaaatttacaaaatactagcaaattacattag |
19370665 |
T |
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| Q |
101 |
tctgttaaattaagataatcaatttacccattccatgtatgtttaccagaaaaattatgaattgagtcacattgttcaatttaagggagtaaattgctat |
200 |
Q |
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| T |
19370664 |
tctgttaaattaagataatcaatttactcattccatgtatgtttaccagaaaaattatgaattgagtcacattgttcaatttaagggagtaaattgctat |
19370565 |
T |
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| Q |
201 |
ttctctcgattttcaaggatgaaagttttgatttactcaactcattaatattatgtcttcgcaactcatgcagacatgtccctatccactacatctcatg |
300 |
Q |
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| T |
19370564 |
ttctctcgattttcaaggatgaaaattttgatttactcaactcattaatattatgtctttgcaactcatgcagacatgtccctatccactacatctcatg |
19370465 |
T |
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| Q |
301 |
tttgacaatttaactcatctggagcttacattagacattgatcatgaacggctgggagtggggtcattcaaatggacatggctgaatattctactttcac |
400 |
Q |
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| T |
19370464 |
tttgacaatttaactcatctggagcttacattagacattgaccatgaatggctgggagtggggtcattcaaatggacatggctgaatattctactttcac |
19370365 |
T |
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| Q |
401 |
atttaccaaagcttcaaactcttatcatggatgaggtttttaatgtc |
447 |
Q |
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| T |
19370364 |
atgtcccaaagcttcaaactcttatcattgatgaggtttttaatgtc |
19370318 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 35138540 - 35138583
Alignment:
| Q |
160 |
aattgagtcacattgttcaatttaagggagtaaattgctatttc |
203 |
Q |
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| T |
35138540 |
aattgactaacattgttcaatttaagggactaaattgctatttc |
35138583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 31135637 - 31135679
Alignment:
| Q |
160 |
aattgagtcacattgttcaatttaagggagtaaattgctattt |
202 |
Q |
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| T |
31135637 |
aattgactcacattgttcaatttaaaggactaaattgctattt |
31135679 |
T |
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