View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_low_3 (Length: 901)
Name: NF15163_low_3
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 730; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 13 - 883
Target Start/End: Complemental strand, 4863815 - 4862948
Alignment:
| Q |
13 |
attattctcacaattttttaaccaataaattattcttacactagaaatttatattttctcaattgacaatgggaatttagggtttgtattcnnnnnnnnn |
112 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863815 |
attattctcacaaatttttaaccaataaattattcttactctagaaatttatattttctcaattgacaatgggaatttagggtttgtattccttttgttt |
4863716 |
T |
|
| Q |
113 |
nnnaaataaaattttagggtttgtattctgcttctagggttttctatactccaatatctgtgtatctccatatatatggcnnnnnnnnttaccctcaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
4863715 |
tttaaataaaattttagggtttgtattctgcttctagggttttctatactccaatatctgtgtatctccatat----ggcaaaaaaaattaccctcaagt |
4863620 |
T |
|
| Q |
213 |
ttnnnnnnncggcttcaaaattttcaaccataccttatcttgatcctgatataacttaattaaattcaagctaattgcatttaaattcaaactaattaag |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863619 |
ttaaaaaaacggcttcaaaattttcaaccataccttatcttgatcctgatataacttaattaaattcaagctaattgcatttaaattcaaactaattaag |
4863520 |
T |
|
| Q |
313 |
gcatacaaatattaattaatttgatnnnnnnnntt-accatgaatctcaagaagctaattggttgaaagacttagaagtagtattatgagtgcccttaag |
411 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4863519 |
gcatacaaatattaattaatttgataaaaaaaatttaccatgaatctcaagaagctaattggttgaaagacttagaagtagtattatgagtgcccttaag |
4863420 |
T |
|
| Q |
412 |
ttgactcctcttcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttcca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4863419 |
ttgactcctcttcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttcca |
4863320 |
T |
|
| Q |
512 |
aacggattattctccggcgatccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaag |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4863319 |
aacggattattctccggcgatccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaag |
4863220 |
T |
|
| Q |
612 |
tacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcac |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4863219 |
tacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcac |
4863120 |
T |
|
| Q |
712 |
atggttgaagttgcactgagacaaagaaactggtggtgattggttccttaagtattgtccaaacgtgttccagtcacgtttcttttgtgactcataacgg |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4863119 |
atggttgaagttgcactgagacaaagaaactggtggtgattggttccttaagtattgtccaaacgtgttccagtcacgtttcttttgtgactcataacgg |
4863020 |
T |
|
| Q |
812 |
ctcaaaggagctactgccgttgttggttgttgatcggagccgccgggccgggacgatgaagatgaggcttga |
883 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4863019 |
ctcaaaggagctactgccgctgttggttgttgatcggagccgccgggccgggacgatgaagatgaggcttga |
4862948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 423 - 813
Target Start/End: Complemental strand, 39556753 - 39556363
Alignment:
| Q |
423 |
tcttctttttctttgtgtaagggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttccaaacggattatt |
522 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||| | |||||||||| |||| || | ||| ||||| |||||||| ||| | | || |||||| | |
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|
| T |
39556753 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaaggattagt |
39556654 |
T |
|
| Q |
523 |
ctccggcgatccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgcc |
622 |
Q |
| |
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||| || | ||| |||| ||| ||||||||||| |||| || || || || ||||||||||| |||||||||||||| | ||||| ||||| ||||| |
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|
| T |
39556653 |
ctctggagttccgccgttttcctcataagcagcccttaacctcccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaaggtgct |
39556554 |
T |
|
| Q |
623 |
ggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggttgaagt |
722 |
Q |
| |
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|| || || || ||||| |||| || ||||| || || ||||| || || ||||||||||||||||| || | ||| || || | |||||||||| | | |
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| T |
39556553 |
ggtggctctggctgtccataaaacatacaaccttgtaaatgaactttggtttttccaaattgatctaaatacctaagaaattccaacacatggttggaat |
39556454 |
T |
|
| Q |
723 |
tgcactgagacaaagaaactggtggtgattggttccttaagtattgtccaaacgtgttccagtcacgtttcttttgtgactcataacggct |
813 |
Q |
| |
|
|||| ||||| | | ||| |||||| | |||| |||||||||| ||||| |||||||| || | | ||||||| || ||||| ||||| |
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|
| T |
39556453 |
tgcagtgagaaagtggaacgggtggtcttaggttgtttaagtattgaccaaaagtgttccaatctcttctcttttgagattcatagcggct |
39556363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 531 - 804
Target Start/End: Original strand, 32002112 - 32002385
Alignment:
| Q |
531 |
atccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatc |
630 |
Q |
| |
|
||||||| | |||||||||||||||||||| | ||| || |||||||||||||| |||||||||||| | | ||||||||||| ||| | || || || |
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|
| T |
32002112 |
atccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtggttc |
32002211 |
T |
|
| Q |
631 |
gggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggttgaagttgcactga |
730 |
Q |
| |
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|| |||||||||||| | ||||| || ||||| || || || |||||||||||||| ||||| | ||||| ||||| |||||||| | || || | |
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|
| T |
32002212 |
ggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatggtttgaattacaattt |
32002311 |
T |
|
| Q |
731 |
gacaaagaaactggtggtgattggttccttaagtattgtccaaacgtgttccagtcacgtttcttttgtgactc |
804 |
Q |
| |
|
|| | | ||||||||| ||| |||||||||||||||||||| |||||||| || | | ||||||||||||| |
|
|
| T |
32002312 |
gatagtgccactggtggtctttgattccttaagtattgtccaaaagtgttccaatctcttctcttttgtgactc |
32002385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 443 - 723
Target Start/End: Complemental strand, 35814844 - 35814564
Alignment:
| Q |
443 |
gggatccctctagcctttgattgacactccttaacttcacgaaggtaaacacgaatagctccggttccaaacggattattctccggcgatccaccgtgtt |
542 |
Q |
| |
|
||||||||||| |||||| |||| ||||| || |||||||||||||| ||||||||||| |||| || ||| |||||| |||||||||| | |
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| T |
35814844 |
gggatccctcttgccttttgctgactatccttcacctcacgaaggtaaacccgaatagctcctccggcaaaggggttagtctccgatgatccaccgttct |
35814745 |
T |
|
| Q |
543 |
cttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccgaa |
642 |
Q |
| |
|
|||| || ||||||| || ||||||||||||||||||||||| ||||||||||| | | ||||||| ||| ||||| || || |||||||| || |
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|
| T |
35814744 |
cttcgtaggcagctcgaaggcgtccgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtccaaa |
35814645 |
T |
|
| Q |
643 |
aaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggttgaagtt |
723 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||| | ||||||||| || ||||| |||||||||||||| |
|
|
| T |
35814644 |
gaagatgcaaccttgaaagtgaaccttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatggttgaagtt |
35814564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 541 - 702
Target Start/End: Complemental strand, 30942124 - 30941963
Alignment:
| Q |
541 |
ttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccg |
640 |
Q |
| |
|
||||||||||||||| |||| | ||| || || ||||| | || |||||||||||||| | ||||||||||| ||||| || || || |||||||| |
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|
| T |
30942124 |
ttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaagtacaaggtgcaggtggttctggttgtcca |
30942025 |
T |
|
| Q |
641 |
aaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaa |
702 |
Q |
| |
|
|||| || ||||| || | ||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
30942024 |
taaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaa |
30941963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 33672055 - 33672113
Alignment:
| Q |
541 |
ttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtc |
599 |
Q |
| |
|
||||||| ||||||||||||| | ||| || | |||||||||||| ||||||||||||| |
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|
| T |
33672055 |
ttcttcaaaagcagctcttagtcttccaatcaatgcatcaagacttccccaagcttgtc |
33672113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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