View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_30 (Length: 445)

Name: NF15163_low_30
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_30
NF15163_low_30
[»] chr1 (5 HSPs)
chr1 (1-431)||(47572747-47573176)
chr1 (113-227)||(47570697-47570811)
chr1 (13-154)||(47582451-47582586)
chr1 (328-403)||(21399726-21399801)
chr1 (249-329)||(46159875-46159955)
[»] chr5 (1 HSPs)
chr5 (249-413)||(35037578-35037743)
[»] chr3 (2 HSPs)
chr3 (238-404)||(38970091-38970257)
chr3 (238-298)||(32349563-32349623)
[»] chr2 (2 HSPs)
chr2 (248-310)||(38833504-38833566)
chr2 (365-413)||(5948950-5948997)
[»] chr7 (3 HSPs)
chr7 (250-311)||(28820801-28820862)
chr7 (289-403)||(36851018-36851134)
chr7 (354-402)||(28820750-28820798)
[»] chr8 (1 HSPs)
chr8 (249-298)||(8705686-8705735)


Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 47572747 - 47573176
Alignment:
Q  1 attcctcgtgcctcagctccaccaggtttaagcttttgaaaatccttcatatatattttcttaattttactaacatttgtgacacaataagacagcaatc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47572747 attcctcgtgcttcagctccaccaggtttaagcttttgaaaatccttcatatatattttcttaattttactaacatttgtgacacaataagacagcaatc 47572846  T
Q  101 aagttaatatcatacc-atatattactgtcaacccatgactactatatctagcaagagttatttatcttttgtaatagcttggtacgttgtgaacgtgaa 199  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47572847 aagttaatatcatacccatatattactgtcaacccatgactactatatctagcaagagttatttatcttttgtaatagcttggtacgttgtgaacgtgaa 47572946  T
Q  200 ttaaaatcattactaatcttttcctatcattctaaggatgttaggacatcaactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaacac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47572947 ttaaaatcattactaatcttttcctatcattctaaggatgttaggacatcaactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaacac 47573046  T
Q  300 gattgtttgttttcacagtttggccaattgcctgcctctgtgattatagagaagctataattccttatactacttgagcgaattagggtttacagtgtta 399  Q
    |||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47573047 gattgtttgttttcgcagtttggccaattgcctgcctc--tgactatagagaagctataattccttatactacttgagcgaattagggtttacagtgtta 47573144  T
Q  400 caagcacatatataataattaactaccccttg 431  Q
    ||||||||||||||||||||||||||||||||    
T  47573145 caagcacatatataataattaactaccccttg 47573176  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 47570697 - 47570811
Alignment:
Q  113 taccatatattactgtcaacccatgactactatatctagcaagagttatttatcttttgtaatagcttggtacgttgtgaacgtgaattaaaatcattac 212  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||| |||||| || |||| |||||||| ||| ||||||||| | ||||||  |     
T  47570697 taccatatatcactgtcaacccatggatactatatctagcaagagatatatatcttctgcaataacttggtacattgagaacgtgaactgaaatcaccaa 47570796  T
Q  213 taatcttttcctatc 227  Q
    |||||||||||||||    
T  47570797 taatcttttcctatc 47570811  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 47582451 - 47582586
Alignment:
Q  13 tcagctccaccaggtttaagcttttgaaaatccttcatatatattttcttaattttactaacatttgtgacacaataagacagcaatcaagttaatatca 112  Q
    ||||||| ||||||||||| |||||||  |||| |||| || | ||| |||||||||| | ||||| ||||| ||||||||| ||||  |      ||||    
T  47582451 tcagctcgaccaggtttaaacttttgattatccctcatttacacttttttaattttacgaccatttctgacataataagacatcaatgta------atca 47582544  T
Q  113 taccatatattactgtcaacccatgactactatatctagcaa 154  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  47582545 taccatatattactgtcaacccatgattactatatctagcaa 47582586  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 21399726 - 21399801
Alignment:
Q  328 tgcctgcctctgtgattatagagaagctataattccttatactacttgagcgaattagggtttacagtgttacaag 403  Q
    ||||| |||||| || ||||||| |||||||||||| |||| ||||||||||||||| |||||| |||||||||||    
T  21399726 tgcctacctctgagactatagagtagctataattccgtatattacttgagcgaattaaggtttatagtgttacaag 21399801  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 46159955 - 46159875
Alignment:
Q  249 caactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaacacgattgtttgttttcacagtttggccaattg 329  Q
    |||||||||||||| ||| ||||||||| |||||   ||| |||||| |||||| |||||||| | ||||| |||||||||    
T  46159955 caactagtaacaaatgattaaagaaaacgcaaattgaaaataatggagcacgatcgtttgtttacgcagttaggccaattg 46159875  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 413
Target Start/End: Complemental strand, 35037743 - 35037578
Alignment:
Q  249 caactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaacacgattgtttgttttcacagtttggccaattgc--ctgcctctgtgattat 346  Q
    |||||||||||| ||||| ||||| |||| ||||   ||||||||||||  ||| |||||||| | || ||||||||||||   |||||||||||| |||    
T  35037743 caactagtaacagaagattaaagataacataaatcgtaaacaatggaacttgatcgtttgtttacgcaatttggccaattgtgtctgcctctgtgactat 35037644  T
Q  347 agagaagctataattccttatactacttgagcgaattagggtttacagtgttacaagcacatatata 413  Q
    |||| ||||||||||||  ||| |||||||| | ||||||||||||| |||||||||| ||||||||    
T  35037643 agagtagctataattccgaatattacttgagtgtattagggtttacaatgttacaagc-catatata 35037578  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 238 - 404
Target Start/End: Complemental strand, 38970257 - 38970091
Alignment:
Q  238 tgttaggacatcaactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaacacgattgtttgttttcacagtttggccaat--tgcctgcc 335  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||  ||||||| ||||||| || |||||||| | || || ||| |||  ||||| ||    
T  38970257 tgttagaacatcaactagtaacagaagatcaaagaaaacgcaaatcgcaaacaacggaacacaatcgtttgtttactcatttcggctaattgtgcctacc 38970158  T
Q  336 tctgtgattatagagaagctataattccttatactacttgagcgaattagggtttacagtgttacaagc 404  Q
    ||| |||   || || | || || |||| |||| |||||||| ||||||||||||||||||||||||||    
T  38970157 tctatga--ctacagcaactgtagttccatatattacttgagtgaattagggtttacagtgttacaagc 38970091  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 32349563 - 32349623
Alignment:
Q  238 tgttaggacatcaactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaaca 298  Q
    |||||| ||| |||||||||||||||||| ||||| |||||||||  ||||||||||||||    
T  32349563 tgttagaacagcaactagtaacaaaagattaaagataacacaaatcgcaaacaatggaaca 32349623  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 38833504 - 38833566
Alignment:
Q  248 tcaactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaacacgattgtttgtt 310  Q
    ||||||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||    
T  38833504 tcaactagtaacaaaagattaaagaaaacacaaattgcaaacaatggaacatgattgtttgtt 38833566  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 5948950 - 5948997
Alignment:
Q  365 tatactacttgagcgaattagggtttacagtgttacaagcacatatata 413  Q
    |||| |||||||| ||||||| |||||||||||||||||| ||||||||    
T  5948950 tatattacttgagtgaattagtgtttacagtgttacaagc-catatata 5948997  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 28820862 - 28820801
Alignment:
Q  250 aactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaacacgattgtttgttt 311  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||    
T  28820862 aactagtaacaaaagattaaataaaacacaaatcacaaacaatggaacacgatcgtttgttt 28820801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 36851018 - 36851134
Alignment:
Q  289 caatggaacacgattgtttgttttcacagtttggccaattgc--ctgcctctgtgattatagagaagctataattccttatactacttgagcgaattagg 386  Q
    ||||||||||| || |||||||| | || || |||||||||   |||||| || || ||||||| ||||| | ||||  ||| || ||||| ||||||||    
T  36851018 caatggaacacaatcgtttgtttacgcaattcggccaattgtgtctgcctatgcgactatagagtagctacagttccgaatattatttgagtgaattagg 36851117  T
Q  387 gtttacagtgttacaag 403  Q
    ||||||| |||||||||    
T  36851118 gtttacaatgttacaag 36851134  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 28820798 - 28820750
Alignment:
Q  354 ctataattccttatactacttgagcgaattagggtttacagtgttacaa 402  Q
    ||||| |||| |||| |||||||| ||||||| ||||||||||||||||    
T  28820798 ctatagttccatatattacttgagtgaattagagtttacagtgttacaa 28820750  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 8705686 - 8705735
Alignment:
Q  249 caactagtaacaaaagatcaaagaaaacacaaataacaaacaatggaaca 298  Q
    |||||||||| |  |||| ||||||||||||||| |||||||||||||||    
T  8705686 caactagtaatagcagattaaagaaaacacaaatcacaaacaatggaaca 8705735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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