View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_32 (Length: 443)
Name: NF15163_low_32
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 43161675 - 43162092
Alignment:
| Q |
11 |
cataaacaaaaataaataaatatatgcgactgcaaatatttcaaacaaagcacaaattttccattgaaattaatagaagtgatcattacaaatacatgca |
110 |
Q |
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| T |
43161675 |
cataaacaaaaataaataaatatatgcgactgcaaatatttcaaacaaagcacaaattttccattgaaattaatagaagtgatgattactaatacatgca |
43161774 |
T |
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| Q |
111 |
atgcaactaatatagattctcctaaattaaatgacttactttctatttgacaacttttctatattataaagaaattcattatttcttatattaagtgaaa |
210 |
Q |
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| T |
43161775 |
atgcaactaatatagattctcttaaattaaatgacttactttctatttgacaacttttctatattataaagaaattcattatttcttctattaagtgaaa |
43161874 |
T |
|
| Q |
211 |
atgcttgcaactatgtagcatgtcagtcagaatatggttggatggcacttatatatacatcacatagtcctttcctgccccatttcaaccgatcaactac |
310 |
Q |
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| T |
43161875 |
atgcttgcaactatgtagcatgtcagtcagaatatggttggatggcacttatatatacatcacatagtcctttcctgccccatttcaaccgatcaactac |
43161974 |
T |
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| Q |
311 |
caaagttggttcaagtgaggatgacatttcatgttgccattatctctttctgttttcatactagattcttcttttctgtcacatgttggcatattgcatg |
410 |
Q |
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| T |
43161975 |
caaagttggttcaagtgaggatgacatttcatgttgccattatctctttctgttttcatactagattcttcttttctgtcacatgttggcatattgcatg |
43162074 |
T |
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| Q |
411 |
tttctccaaaaatccaag |
428 |
Q |
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| T |
43162075 |
tttctccaaaaatccaag |
43162092 |
T |
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