View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_33 (Length: 443)
Name: NF15163_low_33
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 34694827 - 34695233
Alignment:
| Q |
20 |
acaccctcactggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694827 |
acaccctcactggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgat |
34694926 |
T |
|
| Q |
120 |
aacgccagaggggtttaattacttctctggttttccaaatatgagtcaatctttacctcaagaaaatgttgatctgcctctacttaattatgataacatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694927 |
aacgccagaggggtttaattacttctctggttttccaaatatgagtcaatctttacctcaagaaaatgttgatctgcctctacttaattatgataacatc |
34695026 |
T |
|
| Q |
220 |
atgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcatatgcatcaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695027 |
atgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcatatgcatcaac |
34695126 |
T |
|
| Q |
320 |
aagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtgcacc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695127 |
aagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtgcacc |
34695226 |
T |
|
| Q |
420 |
tgatgat |
426 |
Q |
| |
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|| |||| |
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|
| T |
34695227 |
tgctgat |
34695233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 433
Target Start/End: Original strand, 34686901 - 34687311
Alignment:
| Q |
20 |
acaccctcactggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgat |
119 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34686901 |
acaccctcgctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgac |
34687000 |
T |
|
| Q |
120 |
aacgccagaggggtttaattacttctctggttttccaaatatgagtcaatctttacctcaagaaaatgttgatctgcctctacttaattatgataacatc |
219 |
Q |
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||| | |||||||| |||||||||||||| ||| || ||||||| | || | | ||||||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
34687001 |
aacactagaggggtctaattacttctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatc |
34687100 |
T |
|
| Q |
220 |
atgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcatatgcatcaac |
319 |
Q |
| |
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|||||| ||| ||| |||||||||||| |||| || |||| |||||| |||||||||||||||||||||| |||| |||||||||| ||||| |||| |
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| T |
34687101 |
atgaacaatgaaaatgaaaatggaatctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaac |
34687200 |
T |
|
| Q |
320 |
aagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtgcacc |
419 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34687201 |
aagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg---attcaactgatcttgctcctctacctccggccattgacatgagtgcacc |
34687297 |
T |
|
| Q |
420 |
tgatgatgtcccat |
433 |
Q |
| |
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|| |||||| |||| |
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| T |
34687298 |
tgttgatgttccat |
34687311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 172 - 398
Target Start/End: Original strand, 8284953 - 8285179
Alignment:
| Q |
172 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
271 |
Q |
| |
|
||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
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| T |
8284953 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
8285052 |
T |
|
| Q |
272 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatca |
371 |
Q |
| |
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||||||| ||||||||||| | || ||||||| || ||| | || |||||||||||||||||||||||||| | ||| | ||||| ||||||||| | |
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| T |
8285053 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatga |
8285152 |
T |
|
| Q |
372 |
ttcaactgatcttgctcctctccctcc |
398 |
Q |
| |
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||| ||||||||||||||| ||||| |
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| T |
8285153 |
gtcagttgatcttgctcctcttcctcc |
8285179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 8284785 - 8284906
Alignment:
| Q |
28 |
actggaaccggtctacaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccag |
127 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||||| || |||||||||||||| || ||||||| ||||| ||||| | | ||| |
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| T |
8284785 |
actggaaccgatttacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccac |
8284881 |
T |
|
| Q |
128 |
aggggtttaattacttctctggttt |
152 |
Q |
| |
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| |||||||| |||| |||||||| |
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| T |
8284882 |
ataggtttaatcacttatctggttt |
8284906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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