View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_34 (Length: 440)
Name: NF15163_low_34
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 108 - 427
Target Start/End: Complemental strand, 1050664 - 1050345
Alignment:
| Q |
108 |
ataaatcaatcaagtgttgtgttttctgtgtgtgattttttgttgttcatatggcatctcatgatatctcatctgctaagttgtcatcaatgtgtgacat |
207 |
Q |
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| T |
1050664 |
ataaatcaatcaagtgttgtgttttctgtgtgtgattttttgttgttcatatggcatctcatgatatctcatctgctaagttgtcatcaatgtgtgacat |
1050565 |
T |
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| Q |
208 |
aacatacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatccactgttggatgcaaatgtgtttcaaaacgttggttagatttg |
307 |
Q |
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| T |
1050564 |
aacatacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatccactgttggatgcaaatgtgtttcaaaacgttggttagatttg |
1050465 |
T |
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| Q |
308 |
atttcaagtccttatttcattaaacaatttacatcttatcaacgttctcttttcaaatcaatcttcatatttgtcacacctcatgaagttgtgttagctt |
407 |
Q |
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| T |
1050464 |
atttcaagtccttatttcattaaacaatttacatcttatcaacattctcttttcaaatcaatcttcatatttgtcacacctcatgaagttgtgttagctt |
1050365 |
T |
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| Q |
408 |
ttcacgaacaaaatccgtca |
427 |
Q |
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| T |
1050364 |
ttcacgaacaaaatccgtca |
1050345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 409
Target Start/End: Complemental strand, 42876078 - 42875881
Alignment:
| Q |
212 |
tacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatccactgttggatgcaaatgtgtttcaaaacgttggttagatttgattt |
311 |
Q |
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| T |
42876078 |
tacttatcagatgatttattaggccaaattttcacccgtgtgccatccagatcaaccgttgcatgcaaatgtgtttcaaaacgttggttgagtttgattt |
42875979 |
T |
|
| Q |
312 |
caagtccttatttcattaaacaatttacatcttatcaacgttctcttttcaaatcaatcttcatatttgtcacacctcatgaagttgtgttagctttt |
409 |
Q |
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| T |
42875978 |
caaatactgatttcataaaacaattcacatctcatcaacattctcttttcaaatcaatgttgatattcgtcacaccccgtgaacttatgttagctttt |
42875881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 278 - 406
Target Start/End: Original strand, 42750908 - 42751036
Alignment:
| Q |
278 |
aaatgtgtttcaaaacgttggttagatttgatttcaagtccttatttcattaaacaatttacatcttatcaacgttctcttttcaaatcaatcttcatat |
377 |
Q |
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||||||||||||||| ||| ||| | ||| |||||||||||| ||||| | |||||||| || ||| ||||| |||||||||||||||||||| |||| |
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| T |
42750908 |
aaatgtgtttcaaaaggtttgttggctttaatttcaagtcctaatttcctaaaacaattcacgtctcatcaatactctcttttcaaatcaatcttgatat |
42751007 |
T |
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| Q |
378 |
ttgtcacacctcatgaagttgtgttagct |
406 |
Q |
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| T |
42751008 |
ttgtcacacctcatgaacttatgttagct |
42751036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 42750754 - 42750881
Alignment:
| Q |
165 |
ctcatgatatctcatctgctaagttgtcatcaatgtgtgacataacatacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatc |
264 |
Q |
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|||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||| || | |||| |||| || || ||||| ||||| |
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| T |
42750754 |
ctcatgatatctcacttgctaagttgtcttcaaggtgtgacataacatatttatcagatgatttgttgcaccaaattttcactcgcgtgccattgagatc |
42750853 |
T |
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| Q |
265 |
cactgttggatgcaaatgtgtttcaaaa |
292 |
Q |
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||| |||| ||||||||||||||||||| |
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| T |
42750854 |
caccgttgcatgcaaatgtgtttcaaaa |
42750881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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