View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_37 (Length: 436)
Name: NF15163_low_37
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_37 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 43440047 - 43439594
Alignment:
| Q |
1 |
aatatagtgaatgttagagtttattggctataaaa-tacagatttatccaaattaatgaaactaaattattacatttatcaaccgaaataatgaataaaa |
99 |
Q |
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| T |
43440047 |
aatatagtgaatgttagagtttattggctataaaaatacaaatttatccaaattaatgaaactaaattattacatttaccaaccgaaataatgaataaaa |
43439948 |
T |
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| Q |
100 |
tacggacttcgaacaacgcatttaaacaaaatatatacttttatata----------aatgaaactcttgattgcggagtgtacgagacttcttttgtta |
189 |
Q |
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| T |
43439947 |
tacggaattcgaacaacgcatttaaacaaaatatatacttttatatacttttatataaatgaaactcttgattgcggagtgtacgagacttcttttttta |
43439848 |
T |
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| Q |
190 |
ctttgtttaagctatcgtattgagttcattagagaacaagctaacatgctcattaatttgtaaatgcagcacacttaa--tttctaaaaataaattatag |
287 |
Q |
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| T |
43439847 |
ctttgtttaagctctcgtattgagttcattagagaacaagctaacatgctcattaatttgtaaatgcagaacacttaatttttctaaaaataaattatat |
43439748 |
T |
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| Q |
288 |
tattgtt------tataaataaaatagaagatgaaaccgaatccaacaattataataacataagnnnnnnnnnnagagataattataataacataagatg |
381 |
Q |
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| T |
43439747 |
tgttttttatttctataaataaaatagaagatgaaaccgaatccaacaattataataacataag-tttttttttagagataattataataacataagatg |
43439649 |
T |
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| Q |
382 |
atggtggatgttggcataagagcacggtttttgacattttgtaatgcatccctgc |
436 |
Q |
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| T |
43439648 |
atggtggatgttggcataagagcacggtttttgacattttgtaatgtatccctgc |
43439594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 43424648 - 43424604
Alignment:
| Q |
370 |
taacataagatgatggtggatgttggcataagagcacggtttttg |
414 |
Q |
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| T |
43424648 |
taacataagatgatggtagatgtcggcataagaacatggtttttg |
43424604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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