View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_4 (Length: 824)
Name: NF15163_low_4
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 771; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 11 - 809
Target Start/End: Original strand, 35690171 - 35690969
Alignment:
| Q |
11 |
ttcatatcttcattactgtccaattgttttttaatacaaaaagcacacatcatgtgattggaaaataaaatatctatgatactttttgtttaacacatga |
110 |
Q |
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| T |
35690171 |
ttcatatctccattactgtccagttgttttttaatacaaaaagcacacatcatgtgattggaaaataaaatatctatgatactttttttttaacacatga |
35690270 |
T |
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| Q |
111 |
tatcgatgatgatgtattaaactttcttttatgagaatcatgactgttgcataaatatatattatcataattttactccaccaaataaccactcctaatt |
210 |
Q |
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| T |
35690271 |
tatcgatgatgatgtattaaactttcttttatgagaatcatgactgttgcataaatatatattatcataattttactccaccaaataaccactcctaatt |
35690370 |
T |
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| Q |
211 |
tagaatattaaggaatcaaattcttggtatagttggtgacccattcccgtgggagttggtaacattttattgtttgtacttgacctttaaactttaacac |
310 |
Q |
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| T |
35690371 |
tagaatatcaaggaatcaaattcttggtatagttggtgacccattcccttgggagttggtaacattttattgtttgtacttgacctttaaactttaacac |
35690470 |
T |
|
| Q |
311 |
atttggggagttagtgatattttattgtttgtaattgacctttaatctttaacacaattggtctttgaattcaacatttacaattaactgattaatcatt |
410 |
Q |
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| T |
35690471 |
atttggggagttagtgatattttattgtttgtacttgacctttaatctttaacacaattggtctttgaattcaacatttacaattaactgattaatcatt |
35690570 |
T |
|
| Q |
411 |
tgattttataggagtgaggactggaacaacccagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggca |
510 |
Q |
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| T |
35690571 |
tgattttataggagtgaggactggaacaacccagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggca |
35690670 |
T |
|
| Q |
511 |
cagatcgtcgccttttcgtcattgccaacaatgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaaga |
610 |
Q |
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| T |
35690671 |
cagatcgtcgccttttcgtcattgccaacaatgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaaga |
35690770 |
T |
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| Q |
611 |
tgcacatacctctgtttataccatacgtcaagggaagatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtgttta |
710 |
Q |
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| T |
35690771 |
tgcgcatacctctgtttataccatacgtcaagggaagatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtgttta |
35690870 |
T |
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| Q |
711 |
ccaggcttaccagacatttggaacgagttcctttatacgcaaatcatctctcaatcttgacaaataacgtacatatatatcttcatacacgataccttt |
809 |
Q |
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| T |
35690871 |
ccaggcttaccagacatttggaacgagttcctttatacgcaaatcatctctcaatcttgacaaataacgtacatatatatcttcatacacgataccttt |
35690969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 419 - 748
Target Start/End: Original strand, 31823082 - 31823411
Alignment:
| Q |
419 |
taggagtgaggactggaacaacccagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggcacagatcgt |
518 |
Q |
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|||||| ||||| |||||||| ||| |||| ||||||||||| || ||||| || ||| ||||||||||||| || || | | || |||||||||| | |
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| T |
31823082 |
taggagcgaggattggaacaatccaaatggaataaaatgtgcaaaggaaactacaccaattctcaacatgtctactccagtacaagtaggcacagatcat |
31823181 |
T |
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| Q |
519 |
cgccttttcgtcattgccaacaatgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcacata |
618 |
Q |
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| T |
31823182 |
cgtctttttgtcattgctaaaaatgtgacaaaatcaacaaaagtgaaagtggattttatatacatcaccaaattatcagaatatagaaaagatgcacata |
31823281 |
T |
|
| Q |
619 |
cctctgtttataccatacgtcaagggaagatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtgtttaccaggctt |
718 |
Q |
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| T |
31823282 |
cttctgtttacacaatacgtcaaggcaaagtgttaactccagagcaacaagctaaccctgctacttatgcagattgtatccattggtgtttaccagggtt |
31823381 |
T |
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| Q |
719 |
accagacatttggaacgagttcctttatac |
748 |
Q |
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| T |
31823382 |
acctgatacatggaatgagttgctttatac |
31823411 |
T |
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