View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_41 (Length: 423)
Name: NF15163_low_41
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 13114297 - 13114662
Alignment:
| Q |
16 |
caatttatgtattcaattctgaagccatgcaaaacctctcattatccgacttaaaaacaccaatttatgcactactagtgtcttgctcacatgtttcagg |
115 |
Q |
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| T |
13114297 |
caatttatgtattcaactctgaagtcatgcaaaacctctcattatccgacttaaaaacaccaatttatgcactactcgagtcttgctcacatgtttcagg |
13114396 |
T |
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| Q |
116 |
tcggattagaatactcgaatctggaagaccgtttatcaagtgcaacgatgcaggagtacgtgtggctgagacacggtgtgataaaacgctgcgtgaatgg |
215 |
Q |
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| T |
13114397 |
tcggattagaatactcgaatctggaagaccgtttatcaagtgcaacgatgcaggagtacgcgtggctgagacacggtgtgataaaacgctgcatgaatgg |
13114496 |
T |
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| Q |
216 |
tttgatgaaaaagaatacagtgttgaaggacttgtccaagatcatgtgcttggtcctgatcttgctttttctccattggtttttgtcaagg------tac |
309 |
Q |
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| T |
13114497 |
tttgatgaaaaagaatacagtgttgaaggatttgtcccagatcatgtgcttggtcctgatcttgctttttctccattggtttttgtcaaggtacgtatac |
13114596 |
T |
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| Q |
310 |
gtatacgtagattgtgattgtacattgtcatttgcacttcgaggttaagttatttctttttactaa |
375 |
Q |
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| T |
13114597 |
gtatacgtagattgtgactgtacattgtcatttgcactccgtggtaaagttatttctttttactaa |
13114662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 27 - 312
Target Start/End: Original strand, 46009375 - 46009660
Alignment:
| Q |
27 |
ttcaattctgaagccatgcaaaacctctcattatccgacttaaaaacaccaatttatgcactactagtgtcttgctcacatgtttcaggtcggattagaa |
126 |
Q |
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| T |
46009375 |
ttcaattctaaagcggttcaaaacctctcaatatctgacttaaaagcaccaatgtttcaactacttgattcatactcacatgtttcaggtagggttagaa |
46009474 |
T |
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| Q |
127 |
tactcgaatctggaagaccgtttatcaagtgcaacgatgcaggagtacgtgtggctgagacacggtgtgataaaacgctgcgtgaatggtttgatgaaaa |
226 |
Q |
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| T |
46009475 |
tatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaaaacactgcgtgaatggttggatgagaa |
46009574 |
T |
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| Q |
227 |
agaatacagtgttgaaggacttgtccaagatcatgtgcttggtcctgatcttgctttttctccattggtttttgtcaaggtacgta |
312 |
Q |
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| T |
46009575 |
agagtactctgttgatgaacttgtatatgatcatgtgcttggtcctgatcttgcattttctcctttggtttttgtcaaggtacgta |
46009660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 312
Target Start/End: Original strand, 15922124 - 15922295
Alignment:
| Q |
141 |
agaccgtttatcaagtgcaacgatgcaggagtacgtgtggctgagacacggtgtgataaaacgctgcgtgaatggtttgatgaaaaagaatacagtgttg |
240 |
Q |
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| T |
15922124 |
agaccgtttatcaaatgcaatgatgccggtgtgcgaatcgcggagtcgcagtgtgataaaacgctgagggaatggttggatgaaaatgagtattcagttg |
15922223 |
T |
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| Q |
241 |
aaggacttgtccaagatcatgtgcttggtcctgatcttgctttttctccattggtttttgtcaaggtacgta |
312 |
Q |
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| T |
15922224 |
atgaacttgttcatgatcatgtgcttggtcctgatcttgctttttctcctttggtttttgtcaaggtacgta |
15922295 |
T |
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