View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_45 (Length: 413)
Name: NF15163_low_45
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 2447158 - 2446869
Alignment:
| Q |
16 |
tttattacttgtgtgatttaatacacttgctatattgtctatttgagcacttttttgctttccaaatctacgactgagacatattttctatagattaata |
115 |
Q |
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| T |
2447158 |
tttattacttgtgtgatttaatacacttgctatattatctatttgagcacttttttgctttcgaaatctacgactgagacatattttctatagattaata |
2447059 |
T |
|
| Q |
116 |
aggattcctaataacatatggcatgaaattcttaccctttttcaaatgttgtcgtacctttgaacttttgatttgggccaaacttttgaaaagattgagt |
215 |
Q |
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| T |
2447058 |
aggattcctaataacatatggcatgaaattcttaccctttttcaaatgttgtcgtacctttgaacttttgatttgggccaaacttttgaaaagattgagt |
2446959 |
T |
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| Q |
216 |
catgtgttgaccaccttttggagctttcttgtaccactgatcagttgaaacattttaaggaggaacataatttatcttcaaatgtggagg |
305 |
Q |
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| T |
2446958 |
cttgtgttgaccaccttttggagctttcttgtaccactgatcagttgaaacattttaaggaggaacataatttatcttcaaatgtggagg |
2446869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 2446844 - 2446738
Alignment:
| Q |
303 |
aggccaacaagcattttgttggtaagaaggccaagactggcccttacaacttacaacattggtttgtgcttcaccc-tcttcatttcctctttgtccctt |
401 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |
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| T |
2446844 |
aggcaaacaagcattttgttggtaagaaggccaagactggcccttacaacttacaacattggtttgtgcttcacccttcttcatttcctttttgtctctt |
2446745 |
T |
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| Q |
402 |
tgcttct |
408 |
Q |
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| T |
2446744 |
tgcttct |
2446738 |
T |
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