View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_46 (Length: 406)
Name: NF15163_low_46
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 41011485 - 41011107
Alignment:
| Q |
9 |
agcagagaggggataatggtgagtcccattattgtactgaagggaatgactgctaatgctcctttgcatcaagattggagtacttggtgaaggtgatcca |
108 |
Q |
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| T |
41011485 |
agcagagaggggataatggtgagtcccattattgtactgaagggaatgactgctaatgctcctttgcatcaagattggagtacttggtgaaggtgatcca |
41011386 |
T |
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| Q |
109 |
ccatagctgctatagccactgctcaactcagagttattcagttgggagagagtgtcttggaatgagtctaactcagtgaaatcagggatggagttgtttt |
208 |
Q |
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| T |
41011385 |
ccatagctgctatagccactgctcaactcagagttattcagttgggagagagtgtcttggaatgagtctaactcagtgaaatcagggatggagttgtttt |
41011286 |
T |
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| Q |
209 |
gttccataaatggagaagaagagtgaagaagaaagggtgttgagaatggaatattgttggaattagagtgtgcatacatgatgattatgatttatagaag |
308 |
Q |
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| T |
41011285 |
gttccataaatggagaagaagagtgaagaagaaagggtgttgagaatggaatattgttggaattagagtgtgcatacatgatgattatgatttatagaag |
41011186 |
T |
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| Q |
309 |
cacttaattaattaggggtggtgtaactagaagaagaatgaaaatgaagtgtgtatggtaccaacactgcaatgcattt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41011185 |
cacttaattaattaggggtggtgtaactagaagaagaatgaaaatgaagtgtgtatggtaccaacactgcaatgcattt |
41011107 |
T |
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