View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_low_47 (Length: 406)
Name: NF15163_low_47
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 1395781 - 1395398
Alignment:
| Q |
18 |
gagataagttgccatctatcatatcatatgatattatatcatatcataggagcaataattcacaaacaattgaaccaaatagtaatccatgactatcacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395781 |
gagataagttgccatctatcatatcatatgatattatatcatatcataggagcaataattcacaaacaattgaaccaaatagtaatccatgactatcacc |
1395682 |
T |
|
| Q |
118 |
tagaataagtcctaaacagagttacaaacagaatggactacacaatatttatcagcgatagaccagattcagacaaagtattgggattctcgtagatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395681 |
tagaataagtcctaaacagagttacaaacagaatggactacacaatatttatcagccatagaccagattcagacaaagtattgggattctcgtagatttc |
1395582 |
T |
|
| Q |
218 |
aagaaaagttgttttgttttatgctatttggattggattcattaagcctttacaaatcattactctcaaaatgcaagttgcaaaatgagagttcagaaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395581 |
aagaaaagttgttttgttttatgctatttggattggattcattaagcctttacaaatcattactctcaaaatgcaagttgcaaaatgagagttcagaaat |
1395482 |
T |
|
| Q |
318 |
atctagatcaaaaagctatagtttcatttcatttc-----atttgtgttcacttatttttgctagacctacaaatatatctgtg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1395481 |
atctagatcaaaaagctatagtttcatttcatttcatttcatttgtgttcacttatctttgctagacctacaaatatatctgtg |
1395398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 10389223 - 10389127
Alignment:
| Q |
250 |
ttggattcattaagcctttacaaatcattactctcaaaatgcaagttgc-aaaatgagagttcagaaatatctagatcaaaaagctatagtttcatt |
345 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| | ||||| |||||| ||||||| |
|
|
| T |
10389223 |
ttggattcattaagcccttacaaatcattactctcaaactgcaagttgcaaaaatgagaggaaagaaatatctataacaaaaggctatactttcatt |
10389127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University