View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_low_48 (Length: 399)
Name: NF15163_low_48
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_48 |
 |  |
|
| [»] chr4 (53 HSPs) |
 |  |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 53)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 27430877 - 27431256
Alignment:
| Q |
16 |
caagtcaaataagtctcttcgtattatatttctgcgtataagtttaatttgcaatacaaattaactgaaaagtttcctaagcaagtcataatctctttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
27430877 |
caagtcaaataagtctcttcgtattatatttctgcgtataagtttaatttgcaatacaaattaactgaaaagtttcctaagcaagtcataatctctctgt |
27430976 |
T |
 |
| Q |
116 |
ttatatataatcacctgactcagttgtttttctannnnnnnnnnncatttacataaggtagactaagtaagtgcctgctgtacaatttttcctcaaataa |
215 |
Q |
| |
|
||||| || ||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430977 |
ttata----ataacctgactcggttgtttttctattttttttcttcatttaaataaggtagactaagtaagtgcctgctgtacaatttttcctcaaataa |
27431072 |
T |
 |
| Q |
216 |
tctatttcatttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgt |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27431073 |
tctatttcagttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggt |
27431172 |
T |
 |
| Q |
316 |
tggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27431173 |
tggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
27431256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 182 - 399
Target Start/End: Original strand, 27444685 - 27444902
Alignment:
| Q |
182 |
gtaagtgcctgctgtacaatttttcctcaaataatctatttcatttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaa |
281 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
27444685 |
gtaagtgccttctgtacaattttgcctaaaataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaa |
27444784 |
T |
 |
| Q |
282 |
cgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||| |||| |
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|
| T |
27444785 |
cgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaa |
27444884 |
T |
 |
| Q |
382 |
gtatgatattgggatcac |
399 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27444885 |
gtatgatattgggatcac |
27444902 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 27554509 - 27554364
Alignment:
| Q |
230 |
ttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatc |
329 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||| |
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|
| T |
27554509 |
ttcttctgaagg-gttagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatcatatc |
27554411 |
T |
 |
| Q |
330 |
caaattgttcctcggcttgattcaacaattcttgaaatgacggttgg |
376 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| || |||||| |
|
|
| T |
27554410 |
caaattgttcctcagcttgattcagcaattcttgaaacgatggttgg |
27554364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 253 - 389
Target Start/End: Original strand, 27526074 - 27526210
Alignment:
| Q |
253 |
attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc |
352 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||||||| ||||| || |
|
|
| T |
27526074 |
attcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctc |
27526173 |
T |
 |
| Q |
353 |
aacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
27526174 |
aacaattcttggaatgaggtttggttcaagtatgata |
27526210 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 399
Target Start/End: Complemental strand, 27498591 - 27498447
Alignment:
| Q |
255 |
tcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaa |
354 |
Q |
| |
|
||||||||||||| |||| |||||| | |||||||| ||||||||| ||||||||||| ||||||| |||||| | ||||||||||||||||| ||||| |
|
|
| T |
27498591 |
tcaaacgagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaa |
27498492 |
T |
 |
| Q |
355 |
caattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||| ||||| || || |||||||||||||||||||| |||||||| |
|
|
| T |
27498491 |
caagtcttggaacgatggttggttcaagtatgatatagggatcac |
27498447 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 399
Target Start/End: Complemental strand, 27501493 - 27501349
Alignment:
| Q |
255 |
tcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaa |
354 |
Q |
| |
|
|||||| |||||| |||| |||||| | ||||||||| |||||||| ||||||||||| |||||||| || ||| ||||||||||||||||||| ||||| |
|
|
| T |
27501493 |
tcaaacaagaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaa |
27501394 |
T |
 |
| Q |
355 |
caattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||| |||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
27501393 |
caagtcttgaaacaatggttggtttaagtatgatattgggatcac |
27501349 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 399
Target Start/End: Complemental strand, 27557657 - 27557521
Alignment:
| Q |
263 |
gaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattctt |
362 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
27557657 |
gaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattctt |
27557558 |
T |
 |
| Q |
363 |
gaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
27557557 |
gaaatgatggttggtttaagtatgacattgggatcac |
27557521 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 27513738 - 27513884
Alignment:
| Q |
253 |
attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc |
352 |
Q |
| |
|
|||||| |||||||| |||| |||||| || ||||||||||||||||| ||||||||||| ||||||| |||||| || ||||||| || ||||| ||| |
|
|
| T |
27513738 |
attcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttc |
27513837 |
T |
 |
| Q |
353 |
aacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||||||||||| || || | ||||||||||||||||||||||||||| |
|
|
| T |
27513838 |
aacaattcttggaacgaggtttggttcaagtatgatattgggatcac |
27513884 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 27505680 - 27505800
Alignment:
| Q |
269 |
atatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatg |
368 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
27505680 |
atatctaagaaaatctcttctctgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatg |
27505779 |
T |
 |
| Q |
369 |
acggttggttcaagtatgata |
389 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
27505780 |
aggtttggttcaagtatgata |
27505800 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 27487153 - 27487015
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||| || |||||||| ||||||| |||||| |||||||||| || ||||| ||||||||||| |
|
|
| T |
27487153 |
gagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattc |
27487054 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
|||||| || |||||||| |||||||||| |||||||| |
|
|
| T |
27487053 |
ttgaaacgatggttggtttaagtatgataaagggatcac |
27487015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 27480071 - 27479943
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||||| |||||||| | |
|
|
| T |
27480071 |
gagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaactt |
27479972 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||| ||||| | ||||||||||||||||| |
|
|
| T |
27479971 |
ttggaatgatgtttggttcaagtatgata |
27479943 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 261 - 389
Target Start/End: Original strand, 27523373 - 27523501
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||| || |||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
27523373 |
gagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccattggatggtcatattcaaattgttcctcggcttcgctcaacaattc |
27523472 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||| ||||| | ||||||||| ||||||| |
|
|
| T |
27523473 |
ttggaatgaagtttggttcaaatatgata |
27523501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 262 - 399
Target Start/End: Original strand, 27516580 - 27516717
Alignment:
| Q |
262 |
agaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattct |
361 |
Q |
| |
|
|||||| |||| ||||||||| |||||| |||||||||| |||||||| || |||||||||||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
27516580 |
agaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattggatggtcatattcaaattgttcctcagcttggttcaacaattct |
27516679 |
T |
 |
| Q |
362 |
tgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
|| ||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
27516680 |
tggaatgatttttgcttcaaatatgatatagggatcac |
27516717 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 27504062 - 27503964
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||| ||||||||||| | ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
27504062 |
tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata |
27503964 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 27474070 - 27473924
Alignment:
| Q |
253 |
attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc |
352 |
Q |
| |
|
|||||| |||||||| || | ||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||| || |
|
|
| T |
27474070 |
attcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctc |
27473971 |
T |
 |
| Q |
353 |
aacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
| ||||||||| ||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
27473970 |
agcaattcttggaatgatttttgcttcaaatatgatatagggatcac |
27473924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 27502113 - 27502207
Alignment:
| Q |
269 |
atatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttg |
363 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| || |||||||| ||||||| |||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27502113 |
atatctaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaattcttg |
27502207 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 27411455 - 27411564
Alignment:
| Q |
290 |
ctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||||||||| ||| || |||||||| | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
27411455 |
ctgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata |
27411554 |
T |
 |
| Q |
390 |
ttgggatcac |
399 |
Q |
| |
|
||| ||||| |
|
|
| T |
27411555 |
ctggaatcac |
27411564 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 399
Target Start/End: Complemental strand, 27567412 - 27567287
Alignment:
| Q |
274 |
taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt |
373 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||| ||||||| ||||| ||||||| ||| || | |||||| | ||||||||||| || ||| |
|
|
| T |
27567412 |
taagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggt |
27567313 |
T |
 |
| Q |
374 |
tggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
|||||||||||||||| ||| ||||| |
|
|
| T |
27567312 |
tggttcaagtatgatactggaatcac |
27567287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 27412804 - 27412696
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||| ||||||||||| | ||| || |||||| |||| || ||||||||| | |||||||||||||||||||| |
|
|
| T |
27412804 |
tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat |
27412705 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
||||||||| |
|
|
| T |
27412704 |
tgggatcac |
27412696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 27415768 - 27415653
Alignment:
| Q |
284 |
tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt |
383 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| | | ||| ||||||||||| | |||||| |||||| ||||||| |||||||| || ||||||||||||| |
|
|
| T |
27415768 |
tcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagt |
27415669 |
T |
 |
| Q |
384 |
atgatattgggatcac |
399 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
27415668 |
atgatatggggatcac |
27415653 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 27468327 - 27468425
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||| ||||||||||||| |||||||| |||| ||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
27468327 |
tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata |
27468425 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 27469622 - 27469492
Alignment:
| Q |
269 |
atatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatg |
368 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || |||||||| ||||||| |||||| |||||||||| || ||||| |||||| |||||| |||| |
|
|
| T |
27469622 |
atatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatg |
27469523 |
T |
 |
| Q |
369 |
acggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
| | ||| ||||| |||||||| |||||||| |
|
|
| T |
27469522 |
atgtttgcttcaaatatgatatagggatcac |
27469492 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 27524664 - 27524566
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||| ||||||||||| | |||||| |||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
27524664 |
tgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaaatatgata |
27524566 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 27414297 - 27414402
Alignment:
| Q |
284 |
tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt |
383 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||||| ||||||||||||| ||| || | |||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
27414297 |
tcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagt |
27414396 |
T |
 |
| Q |
384 |
atgata |
389 |
Q |
| |
|
|||||| |
|
|
| T |
27414397 |
atgata |
27414402 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 27475580 - 27475677
Alignment:
| Q |
292 |
gcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||||||||| ||||| ||||| | ||||| ||||||||||| | ||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
27475580 |
gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata |
27475677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 389
Target Start/End: Complemental strand, 27515038 - 27514933
Alignment:
| Q |
284 |
tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt |
383 |
Q |
| |
|
|||||| | |||||||| ||||| ||||| | ||||| ||||||||||||| |||||||| |||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
27515038 |
tcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagt |
27514939 |
T |
 |
| Q |
384 |
atgata |
389 |
Q |
| |
|
|||||| |
|
|
| T |
27514938 |
atgata |
27514933 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 27425952 - 27425844
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||| ||||||||||| | |||||| |||| |||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
27425952 |
tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatat |
27425853 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
||||||||| |
|
|
| T |
27425852 |
tgggatcac |
27425844 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 399
Target Start/End: Complemental strand, 27460634 - 27460510
Alignment:
| Q |
275 |
aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggtt |
374 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||| ||| ||||||||| ||||| || |
|
|
| T |
27460634 |
aagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgattttt |
27460535 |
T |
 |
| Q |
375 |
ggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
| ||||| |||||||| |||||||| |
|
|
| T |
27460534 |
gcttcaaatatgatatagggatcac |
27460510 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 27476857 - 27476729
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||| || |||||||| ||||||| |||||| ||||||||||||| ||| ||| || ||| |
|
|
| T |
27476857 |
gagaggtaatatccaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttc |
27476758 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||| ||||| | ||||||||||||||||| |
|
|
| T |
27476757 |
ttggaatgaggtttggttcaagtatgata |
27476729 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #30
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 27490096 - 27490004
Alignment:
| Q |
295 |
aggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatga |
387 |
Q |
| |
|
|||||| ||||| ||||| ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
27490096 |
aggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatggtttgtttaagtatga |
27490004 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #31
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 27508987 - 27508896
Alignment:
| Q |
296 |
ggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatga |
387 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||||||||| | |||||| || ||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
27508987 |
ggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaaatatga |
27508896 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 27585835 - 27585720
Alignment:
| Q |
284 |
tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt |
383 |
Q |
| |
|
|||||| |||||||||| |||||||| || ||||||| ||||||||||| | ||| ||||||||| ||| ||| |||||||| | ||||||||||||| |
|
|
| T |
27585835 |
tcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagt |
27585736 |
T |
 |
| Q |
384 |
atgatattgggatcac |
399 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
27585735 |
atgatacggggatcac |
27585720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 27421924 - 27422043
Alignment:
| Q |
284 |
tcttctctgcaaggaattgtgagaccacctgttggatggtcat----atccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttc |
379 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| || | ||||||||| ||| || |||||||| | |||||||||||| | ||||||||| |
|
|
| T |
27421924 |
tcttcactgcaaggaattgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttc |
27422023 |
T |
 |
| Q |
380 |
aagtatgatattgggatcac |
399 |
Q |
| |
|
|||||||||| ||| ||||| |
|
|
| T |
27422024 |
aagtatgatactggaatcac |
27422043 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 27423316 - 27423254
Alignment:
| Q |
337 |
ttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
27423316 |
ttcctcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgatatgcggatcac |
27423254 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 27424513 - 27424622
Alignment:
| Q |
290 |
ctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||||| ||||| || |||||||| ||||||| ||||||||| ||| ||| || | |||||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27424513 |
ctgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgata |
27424612 |
T |
 |
| Q |
390 |
ttgggatcac |
399 |
Q |
| |
|
||| ||||| |
|
|
| T |
27424613 |
ctggaatcac |
27424622 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #36
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 27466999 - 27466910
Alignment:
| Q |
253 |
attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctc |
342 |
Q |
| |
|
|||||| | |||||| || | ||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27466999 |
attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc |
27466910 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #37
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 399
Target Start/End: Original strand, 27500321 - 27500446
Alignment:
| Q |
274 |
taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt |
373 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| || ||||| || | ||| ||| ||||||||| ||||| | |
|
|
| T |
27500321 |
taagaaaaggtcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattggctcagcaattcttggaatgaactt |
27500420 |
T |
 |
| Q |
374 |
tggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||||| ||||||||||| |||||||| |
|
|
| T |
27500421 |
tggtttaagtatgatatagggatcac |
27500446 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #38
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 399
Target Start/End: Original strand, 27502754 - 27502915
Alignment:
| Q |
238 |
aagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgt |
337 |
Q |
| |
|
||||||||||||| | |||| |||||||| |||| || ||||| |||||| |||||||| || |||||||| ||||||||||||||||||||| | |
|
|
| T |
27502754 |
aagatgttagcacctactcaagcgagaagtgatatctacgaaaaaatcttcttcacaaggaatagtaagaccacccattggatggtcatatccaaattct |
27502853 |
T |
 |
| Q |
338 |
tcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||| | ||||| ||| ||| ||||||||||| | ||| ||||| ||||| ||||| ||||| |
|
|
| T |
27502854 |
tccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattggaatcac |
27502915 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #39
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 27485943 - 27486047
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||| ||||||||||||| ||| || ||||||| | |||||||||||| | |||||||||||||||||||| |
|
|
| T |
27485943 |
tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatat |
27486042 |
T |
 |
| Q |
391 |
tggga |
395 |
Q |
| |
|
||||| |
|
|
| T |
27486043 |
tggga |
27486047 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 27497322 - 27497430
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| ||||||||||| | |||||| |||||| ||||||| | |||||| | |||||||| |||||||| || |
|
|
| T |
27497322 |
tgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatgagat |
27497421 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
|||||||| |
|
|
| T |
27497422 |
agggatcac |
27497430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #41
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 27506838 - 27506730
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||| ||||||||||||| ||| || ||||||| | |||||||||||| | |||||||| ||||||||||| |
|
|
| T |
27506838 |
tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat |
27506739 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
||||||||| |
|
|
| T |
27506738 |
tgggatcac |
27506730 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #42
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 27563346 - 27563454
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||||| | ||| ||||||||| ||| ||| |||||||| | | ||||||||||||||||| |
|
|
| T |
27563346 |
tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgatac |
27563445 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
|||||||| |
|
|
| T |
27563446 |
ggggatcac |
27563454 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #43
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 395
Target Start/End: Original strand, 27478884 - 27478987
Alignment:
| Q |
292 |
gcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatatt |
391 |
Q |
| |
|
||||||||| ||||| ||||| | ||||| ||||||||||||| ||| || ||||||| | |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
27478884 |
gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt |
27478983 |
T |
 |
| Q |
392 |
ggga |
395 |
Q |
| |
|
|||| |
|
|
| T |
27478984 |
ggga |
27478987 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #44
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 27571801 - 27571655
Alignment:
| Q |
253 |
attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc |
352 |
Q |
| |
|
|||||| |||||||||| ||||| ||| | || || | ||||||||||||||||||||| ||||||| ||||||||||||| ||| || | |||||| |
|
|
| T |
27571801 |
attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgattt |
27571702 |
T |
 |
| Q |
353 |
aacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
| ||||||||||| || || ||| |||| ||||||| ||| ||||| |
|
|
| T |
27571701 |
agtaattcttgaaacgatggctggctcaaatatgatactggaatcac |
27571655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #45
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 27507760 - 27507857
Alignment:
| Q |
238 |
aagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaatt |
335 |
Q |
| |
|
||||||||||||| | |||| |||||||| |||| |||||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
27507760 |
aagatgttagcacctactcaagcgagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccattggatggtcatatccaaatt |
27507857 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #46
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 27556362 - 27556469
Alignment:
| Q |
274 |
taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt |
373 |
Q |
| |
|
||||||| | ||||| ||||| ||||||||||||||||| | | ||| ||||||||||||| ||| || ||||||| | |||||||||||||| ||| |
|
|
| T |
27556362 |
taagaaagcatcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggt |
27556461 |
T |
 |
| Q |
374 |
tggttcaa |
381 |
Q |
| |
|
|||||||| |
|
|
| T |
27556462 |
tggttcaa |
27556469 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #47
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 17970452 - 17970343
Alignment:
| Q |
278 |
aaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggt |
377 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||| ||||||| || ||||| |||| |||||| || || ||| ||| | ||||||||| | ||||| |
|
|
| T |
17970452 |
aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt |
17970353 |
T |
 |
| Q |
378 |
tcaagtatga |
387 |
Q |
| |
|
|||||||||| |
|
|
| T |
17970352 |
tcaagtatga |
17970343 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #48
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 399
Target Start/End: Original strand, 27419054 - 27419179
Alignment:
| Q |
274 |
taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt |
373 |
Q |
| |
|
||||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||||| ||| || | |||||| | ||||||||||| || || |
|
|
| T |
27419054 |
taagaaagcatcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggc |
27419153 |
T |
 |
| Q |
374 |
tggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||| |||| ||||||| ||| ||||| |
|
|
| T |
27419154 |
tggctcaaatatgatactggaatcac |
27419179 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #49
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 27570049 - 27570157
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||| |||||||| || | |||||| |||||| ||| ||| ||||||||||| |||||| | |||||||||| |
|
|
| T |
27570049 |
tgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgatac |
27570148 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
|||||||| |
|
|
| T |
27570149 |
ggggatcac |
27570157 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #50
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 27444523 - 27444642
Alignment:
| Q |
21 |
caaataagtctcttcgtattatatttctgcgtataagtttaatttgcaatacaaattaactgaaaagtttcctaagcaagtcataatctctttgtttata |
120 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||| | ||||||| ||| |||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
27444523 |
caaatatgtctctttgtattatatttctgcatataagttt-----gtaatacaacttagttgaaaattttcgtaaataagtcataatctctttgtt---- |
27444613 |
T |
 |
| Q |
121 |
tataatcacctgactcagttgtttttcta |
149 |
Q |
| |
|
||||||| || ||||||||||||||||| |
|
|
| T |
27444614 |
cataatcatctcactcagttgtttttcta |
27444642 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #51
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 27559223 - 27559282
Alignment:
| Q |
274 |
taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaa |
333 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
27559223 |
taagaaagcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaa |
27559282 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 27420548 - 27420450
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||| ||||||||||| | |||||| ||||| ||| ||| |||||||||| |||||| |||||||||||| |
|
|
| T |
27420548 |
tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgata |
27420450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 27527275 - 27527193
Alignment:
| Q |
317 |
ggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||||| ||||||||||| | |||||| |||||| ||| ||| ||| |||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
27527275 |
ggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattgggatcac |
27527193 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 38028736 - 38028862
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||| ||||||||||||| |||||| | |
|
|
| T |
38028736 |
gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaacaggtt |
38028835 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatga |
387 |
Q |
| |
|
||||||||| | ||||||||||||||| |
|
|
| T |
38028836 |
ttgaaatgaagcttggttcaagtatga |
38028862 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 38040051 - 38040177
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| || || |||||||||||||||| |||| ||||||||||||| |||||| | |
|
|
| T |
38040051 |
gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaggtt |
38040150 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatga |
387 |
Q |
| |
|
||||||||| | ||||||||||||||| |
|
|
| T |
38040151 |
ttgaaatgaagcttggttcaagtatga |
38040177 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 261 - 386
Target Start/End: Original strand, 38036763 - 38036888
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||||||||| || || |||||||||||||||| |||| ||||||||||||| ||||||| | |
|
|
| T |
38036763 |
gagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaatt |
38036862 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatg |
386 |
Q |
| |
|
||||||||| | |||||||||||||| |
|
|
| T |
38036863 |
ttgaaatgaagcttggttcaagtatg |
38036888 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 260 - 399
Target Start/End: Complemental strand, 55084957 - 55084818
Alignment:
| Q |
260 |
cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt |
359 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||||||||||||| ||||| ||||||| || |||||||||| |||||| || || ||||||| | |
|
|
| T |
55084957 |
cgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagt |
55084858 |
T |
 |
| Q |
360 |
cttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
|||||||||| |||||||||||||| || || |||||||| |
|
|
| T |
55084857 |
cttgaaatgatggttggttcaagtaagacatagggatcac |
55084818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 260 - 396
Target Start/End: Complemental strand, 50910131 - 50909995
Alignment:
| Q |
260 |
cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt |
359 |
Q |
| |
|
||||||||||| | ||||| || |||||| |||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||||||||||| | |
|
|
| T |
50910131 |
cgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagt |
50910032 |
T |
 |
| Q |
360 |
cttgaaatgacggttggttcaagtatgatattgggat |
396 |
Q |
| |
|
||||||||| | ||||||||||||||| || ||||| |
|
|
| T |
50910031 |
tttgaaatgaagcttggttcaagtatgacatggggat |
50909995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 387
Target Start/End: Original strand, 38033744 - 38033875
Alignment:
| Q |
260 |
cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgtt----ggatggtcatatccaaattgttcctcggcttgattcaac |
355 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||| |||||||||| || || || ||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
38033744 |
cgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccgcccattaattggatggtcatatccaaattcttcctcggcttgactcaac |
38033843 |
T |
 |
| Q |
356 |
aattcttgaaatgacggttggttcaagtatga |
387 |
Q |
| |
|
|| | ||||||||| | ||||||||||||||| |
|
|
| T |
38033844 |
aagttttgaaatgaagcttggttcaagtatga |
38033875 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 50904761 - 50904885
Alignment:
| Q |
260 |
cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt |
359 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||| |||| ||||| ||| || ||||||| | |
|
|
| T |
50904761 |
cgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagt |
50904860 |
T |
 |
| Q |
360 |
cttgaaatgacggttggttcaagta |
384 |
Q |
| |
|
|||||||||| | |||||||||||| |
|
|
| T |
50904861 |
cttgaaatgaagtttggttcaagta |
50904885 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 50911853 - 50911965
Alignment:
| Q |
275 |
aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggtt |
374 |
Q |
| |
|
|||||||| ||||| ||||||||||||| || ||||| |||| || ||||||||||||| |||||| |||||| ||||||| | ||||||||| | || |
|
|
| T |
50911853 |
aagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagctt |
50911952 |
T |
 |
| Q |
375 |
ggttcaagtatga |
387 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50911953 |
ggttcaagtatga |
50911965 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 48840696 - 48840806
Alignment:
| Q |
275 |
aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggtt |
374 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||| ||||||| ||||||||||||| || ||| ||| | ||||||| ||||||||||| | || |
|
|
| T |
48840696 |
aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggctt |
48840794 |
T |
 |
| Q |
375 |
ggttcaagtatg |
386 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48840795 |
ggttcaagtatg |
48840806 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 38024844 - 38024980
Alignment:
| Q |
260 |
cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt |
359 |
Q |
| |
|
||||||||||| | | ||||| ||||||| |||||||||| ||||| ||||| |||| || ||||||||||||| |||||| |||||| |||| || | |
|
|
| T |
38024844 |
cgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt |
38024943 |
T |
 |
| Q |
360 |
cttgaaatgacggttggttcaagtatgatattgggat |
396 |
Q |
| |
|
|||||| || | ||||||||||||||| || ||||| |
|
|
| T |
38024944 |
tttgaaaggaagcttggttcaagtatgacatggggat |
38024980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 38031296 - 38031432
Alignment:
| Q |
260 |
cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt |
359 |
Q |
| |
|
||||||||||| | | ||||| ||||||| |||||||||| ||||| ||||| |||| || ||||||||||||| |||||| |||||| |||| || | |
|
|
| T |
38031296 |
cgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt |
38031395 |
T |
 |
| Q |
360 |
cttgaaatgacggttggttcaagtatgatattgggat |
396 |
Q |
| |
|
|||||| || | ||||||||||||||| || ||||| |
|
|
| T |
38031396 |
tttgaaaggaagcttggttcaagtatgacatggggat |
38031432 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 38044043 - 38043935
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||||||||| || || ||||||| ||||||||||||| |||||| |||||| ||| ||| |||||||| || | ||| ||||||||||| || |
|
|
| T |
38044043 |
tgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacat |
38043944 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
|||||||| |
|
|
| T |
38043943 |
agggatcac |
38043935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 21604724 - 21604850
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc |
360 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| || || |||||||||||||||| |||| ||||||| ||||| |||||| | |
|
|
| T |
21604724 |
gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcctcgtcttgactcaacatgtt |
21604823 |
T |
 |
| Q |
361 |
ttgaaatgacggttggttcaagtatga |
387 |
Q |
| |
|
||||||||| | ||||||||||||||| |
|
|
| T |
21604824 |
ttgaaatgaagcttggttcaagtatga |
21604850 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 21607265 - 21607401
Alignment:
| Q |
260 |
cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt |
359 |
Q |
| |
|
||||||||||| | | ||||| |||||| ||||||||| ||||| ||||| |||| || ||||||||||||| |||||| |||||| |||| || | |
|
|
| T |
21607265 |
cgagaagtaatttccatgaaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt |
21607364 |
T |
 |
| Q |
360 |
cttgaaatgacggttggttcaagtatgatattgggat |
396 |
Q |
| |
|
|||||| || | | ||||||||||||| || ||||| |
|
|
| T |
21607365 |
tttgaaaggaagctcggttcaagtatgacatggggat |
21607401 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 21634699 - 21634608
Alignment:
| Q |
275 |
aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaa |
366 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| || || || |||| ||||||||||||| |||||| |||||| ||| ||| |||||||| |
|
|
| T |
21634699 |
aagaaaacatcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaa |
21634608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 399
Target Start/End: Original strand, 1754206 - 1754349
Alignment:
| Q |
255 |
tcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaa |
354 |
Q |
| |
|
|||| |||||||| |||| |||||||| || |||||| |||||||| ||||||||||| | ||||| |||||| |||| |||||||| | || || | |
|
|
| T |
1754206 |
tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttag |
1754304 |
T |
 |
| Q |
355 |
caattcttgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
1754305 |
caatttttgaaatgacgattggttcaagtatgatacggggatcac |
1754349 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 1756757 - 1756865
Alignment:
| Q |
291 |
tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat |
390 |
Q |
| |
|
|||||||||| ||||| ||||| | || || ||||||||||||| ||| || |||||| ||||||| | |||||| || |||||||||||||||||||| |
|
|
| T |
1756757 |
tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatat |
1756856 |
T |
 |
| Q |
391 |
tgggatcac |
399 |
Q |
| |
|
||||||||| |
|
|
| T |
1756857 |
tgggatcac |
1756865 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 1759422 - 1759290
Alignment:
| Q |
261 |
gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgat----tcaaca |
356 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||| |||| ||||||||||| ||||||||| ||| ||||||||||||| ||||| | |||||| |
|
|
| T |
1759422 |
gagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccattggatggttgtattcaaattgttcctcagcttgcttggctcaaca |
1759323 |
T |
 |
| Q |
357 |
attcttgaaatgacggttggttcaagtatgata |
389 |
Q |
| |
|
||||||| ||||| | |||||| || ||||||| |
|
|
| T |
1759322 |
attcttggaatgatgtttggtttaaatatgata |
1759290 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 399
Target Start/End: Complemental strand, 1754857 - 1754720
Alignment:
| Q |
262 |
agaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattct |
361 |
Q |
| |
|
|||||| |||||| ||| || |||||| ||||| |||| ||||| ||||| ||||||| ||||||||||| | |||| | |||||| ||||||| | |
|
|
| T |
1754857 |
agaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggat |
1754758 |
T |
 |
| Q |
362 |
tgaaatgacggttggttcaagtatgatattgggatcac |
399 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
1754757 |
tgaaacgatggttgattcaagtatgatattgggatcac |
1754720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 3073722 - 3073613
Alignment:
| Q |
278 |
aaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggt |
377 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||| ||||||| || ||||| |||| |||||| || || ||| ||| | ||||||||| | ||||| |
|
|
| T |
3073722 |
aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt |
3073623 |
T |
 |
| Q |
378 |
tcaagtatga |
387 |
Q |
| |
|
|||||||||| |
|
|
| T |
3073622 |
tcaagtatga |
3073613 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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