View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_49 (Length: 390)
Name: NF15163_low_49
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 101 - 372
Target Start/End: Original strand, 12503171 - 12503438
Alignment:
| Q |
101 |
atacctcgtcgccaacactcgcaactacatcctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatg |
200 |
Q |
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| T |
12503171 |
atacctcgtcgtcaacactcgcaactacatcctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatg |
12503270 |
T |
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| Q |
201 |
tccactaatctctctacggtacatgttacatatatatgactaatagccaacagtaatgcacatgatataaggaaatatacattaagtggctttatggcta |
300 |
Q |
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| T |
12503271 |
tccactaatctctctacagtacatgttacatatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggcta |
12503370 |
T |
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| Q |
301 |
ttatttccttttgataagccaacggtaataaaccaaccatatataaggaaatatacttaagtgcctctattt |
372 |
Q |
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| T |
12503371 |
ttatttccttttgataagccaacggtaata----aaccatatataaggaaatatacttaagtgcctctattt |
12503438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 333
Target Start/End: Original strand, 44523855 - 44524062
Alignment:
| Q |
132 |
ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacggtacatgttac-- |
229 |
Q |
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| T |
44523855 |
ctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttacac |
44523954 |
T |
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| Q |
230 |
----atatatatgactaatagccaacagtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacgg |
325 |
Q |
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| T |
44523955 |
ttacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaacag |
44524054 |
T |
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| Q |
326 |
taataaac |
333 |
Q |
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|||||||| |
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| T |
44524055 |
taataaac |
44524062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 37726239 - 37726155
Alignment:
| Q |
132 |
ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctcta |
216 |
Q |
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| T |
37726239 |
ctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctcta |
37726155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 286
Target Start/End: Complemental strand, 41322264 - 41322105
Alignment:
| Q |
133 |
taatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacggtacatgt------ |
226 |
Q |
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|||||||| |||||||| |||||| ||||||||| || ||| |||||||||| |||||||||||||||| |||| || |||||| |||||||| |
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| T |
41322264 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactgatatctctaaagtacatgttacact |
41322165 |
T |
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| Q |
227 |
tacatatatatgactaatagccaacagtaatgcacatgatataaggaaatatacattaag |
286 |
Q |
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|||||||||||| |||| ||||| ||||| ||||||||||| || |||||||||||| |
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| T |
41322164 |
tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag |
41322105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 41319115 - 41319065
Alignment:
| Q |
283 |
taagtggctttatggctattatttccttttgataagccaacggtaataaac |
333 |
Q |
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|||||| ||| ||||||||||||| ||||||||||| |||||||||||||| |
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| T |
41319115 |
taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaac |
41319065 |
T |
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