View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_5 (Length: 740)

Name: NF15163_low_5
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_5
NF15163_low_5
[»] chr4 (1 HSPs)
chr4 (22-722)||(43704618-43705319)


Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 22 - 722
Target Start/End: Original strand, 43704618 - 43705319
Alignment:
Q  22 atgagaaaaataatagtccatatattttcatatacgcccccaattgccacactgctctattgaaactgtaaggtagaagatacttgtgagatataatttg 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43704618 atgagaaaaataatagtctatatattttcatatacgcccccaattgccacactgctctattgaaacggtaaggtagaagatacttgtgagatataatttg 43704717  T
Q  122 ggggcatattatacttttgtcatacaattatatactactgnnnnnnncaaatacgtgcaaagtgtgattgttaaagctcacttgtctcgtaaatatagct 221  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704718 ggggcatattatacttttgtcatacaattatatactactgtttttttcaaatacgtgcaaagtgtgattgttaaagctcacttgtctcgtaaatatagct 43704817  T
Q  222 tagaaggtnnnnnnnnn-ggtctacatcgatatttaatatgttgtggtacatacaattatacacttctcggtacttatctttgtgtgagtttttcagtga 320  Q
    ||||||||          |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704818 tagaaggtaaaaaaaaaaggtctacatcgatatttaatatgtcgtggtacatacaattatacacttctcggtacttatctttgtgtgagtttttcagtga 43704917  T
Q  321 gattctttaaagttaaaaacatattacagtgcacttaagcacaactgcactccgttaattcacagtagtaataaaatctgtagcatgattagaaaacata 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704918 gattctttaaagttaaaaacatattacagtgcacttaagcacaactgcactccgttaattcacagtagtaataaaatctgtagcatgattagaaaacata 43705017  T
Q  421 acatatacatgctacaaatacttcnnnnnnnaaggaacttatggttcttcatgacataaactttgggtattggtcaacaaaagaaactttgggtttgcca 520  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43705018 acatatacatgctacaaatacttctttttttaaggaacttatggttcttcatgacataaactttgggtattggtcaacaaaagaaactttgggtttgcca 43705117  T
Q  521 ttgcacactcgcactcagcagtcattttaaacttcaagctccgcccccttatttgtacaacggtttaggcttctttttccgacgtcgaagtgaaaatact 620  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  43705118 ttgcacactcgcactcagcaatcattttaaacttcaagctccgcccccttgtttgtacaacggtttaggcttctttttccaacgtcgaagtgaaaacact 43705217  T
Q  621 atttaaaactcacacacacaactatgaggtatctgagtgaaaatgtgtgacttaactaatattacaattgctagctgagttatatcctacagacacaatt 720  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  43705218 atttaaaactcacacacaaaactatgaggtatctgagtgaaaatgtgtgacttaactaatattacaattgctagctgagttatatcctatgcacacaatt 43705317  T
Q  721 ta 722  Q
    ||    
T  43705318 ta 43705319  T

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