View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_52 (Length: 369)
Name: NF15163_low_52
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 1289701 - 1289999
Alignment:
| Q |
14 |
caaggttaatgccagacatcataacaaaacacaaatatgagcaatgtcacttaaggaaacaaagtaaattccctttatgcaaataacaatagtagcgtgg |
113 |
Q |
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| T |
1289701 |
caaggttaatgccagacatcataacaaaacacaaatacgagcaatggtacttgaggaaacaaagtaaattccctttatgcaaataacaataatagggtgg |
1289800 |
T |
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| Q |
114 |
aatctaaaggttaaaccaaatcttctttatttaacgattatatttgcatgataattgcaacaacagccaagtcttatctcggttggctatatgaatca-- |
211 |
Q |
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| T |
1289801 |
aatctaaaggttaaaccaaatcttctttatttaacgattatatttgcatgataattgcaacaacaaccaagtcttatctcggttggctatatgaatcaaa |
1289900 |
T |
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| Q |
212 |
---------aatgttatatcgtaaatcatgtctatattaaacaattagcctctaaatctatcttaattacacttttttcttgaccttattctgcctctaa |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
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| T |
1289901 |
tgacatcataatgttatatcgtaaatcatgtctatattaaacaattagcctctaaatctatcttaattacac-tttttcttgaccttctactgcctctaa |
1289999 |
T |
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