View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_54 (Length: 363)
Name: NF15163_low_54
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_54 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 5476596 - 5476250
Alignment:
| Q |
19 |
agtagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagtta |
118 |
Q |
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| T |
5476596 |
agtagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagtta |
5476497 |
T |
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| Q |
119 |
ttgtaactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggattta--tctcaccgccaaaaagtgaaaatatacttacagttttgttgca |
216 |
Q |
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| T |
5476496 |
ttgtaactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttaatattcaccgccaaaaagtgaaaatatacttacagttttgttgca |
5476397 |
T |
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| Q |
217 |
gataacataggtattgagctcaaattttagaaaatggcaagtatggtcgtcacattaaatacgctccaaactatagaaatattcccagacccatgaagaa |
316 |
Q |
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|||||||||||||||||||||||| ||||||| ||| | ||| |||| |||||||| ||||| || | || || || ||| ||||| ||||||||| ||| |
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| T |
5476396 |
gataacataggtattgagctcaaactttagaatatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaa |
5476297 |
T |
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| Q |
317 |
cggcaataggaaggaacattgagatctttattgatgttaaggagtgc |
363 |
Q |
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|||||| ||||||| ||||||||||||| ||||||||||||||||| |
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| T |
5476296 |
aggcaattggaaggatcattgagatcttttttgatgttaaggagtgc |
5476250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 363
Target Start/End: Complemental strand, 5495499 - 5495153
Alignment:
| Q |
23 |
gggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagttattgt |
122 |
Q |
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| T |
5495499 |
gggaccattccagaaaaatatgaatctgataagtcaaggtaattgagcatattgagggaaccaataaattctggaatgggaactccttcgaaatcattat |
5495400 |
T |
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| Q |
123 |
aactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttatctcaccgccaa------aaagtgaaaatatacttacagttttgttgca |
216 |
Q |
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| T |
5495399 |
atcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaagggagacagtgaaaatatacttacagttttgatgca |
5495300 |
T |
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| Q |
217 |
gataacataggtattgagctcaaattttagaaaatggcaagtatggtcgtcacattaaatacgctccaaactatagaaatattcccagacccatgaagaa |
316 |
Q |
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| T |
5495299 |
gataagatagggcctgagcttaagctttaaaacatgaccagtttggttgttacattgtatacccttccaattacagcaatcttccccgacccatgaagaa |
5495200 |
T |
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| Q |
317 |
cggcaataggaaggaacattgagatctttattgatgttaaggagtgc |
363 |
Q |
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| T |
5495199 |
agacaattggatggatctttgagatcttttttgattttaaggagtgc |
5495153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 5481667 - 5481510
Alignment:
| Q |
24 |
ggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagttattgta |
123 |
Q |
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|||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||| | ||| | |
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| T |
5481667 |
ggaccattcctgtaaaatttgcattagataagtcaaggtaattgagcatattgagagaaccaataaattctggaatgggaactcctttgaaatcattaaa |
5481568 |
T |
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| Q |
124 |
actcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttatctcaccg |
181 |
Q |
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| T |
5481567 |
gcttaggtccaagtgactcaaatgttttaagttaactaatgaaggatttatcttaccg |
5481510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 5484534 - 5484186
Alignment:
| Q |
21 |
tagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagttatt |
120 |
Q |
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||||||| ||||| ||||| |||| ||| |||| |||||| ||||||| ||| ||||||||||||||| ||||||||||| |||||||| ||| | ||| |
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| T |
5484534 |
tagggacaattccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttctggaatgggaattccttcgaaatcatt |
5484435 |
T |
|
| Q |
121 |
gtaactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttatctcaccgccaa------aaagtgaaaatatacttacagttttgttg |
214 |
Q |
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| | || | ||||||||||||||||||| |||||| || |||||||||||||||||||| || | | |||| | |||| || ||| || || |
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| T |
5484434 |
gaagcttaagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatctcaccaccgaaggctgactgtgacagtatagttgtggttctggtg |
5484335 |
T |
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| Q |
215 |
cagataacataggtattgagctcaaattttagaaaatggcaagtatggtcgtcacattaaatacgctccaaactatagaaatattcccagacccatgaag |
314 |
Q |
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||||||| ||||| ||||||||||| ||||||| ||| | ||| |||| |||||||| ||||| || | || || || ||| ||||| || ||||||| |
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| T |
5484334 |
cagataagatagggcttgagctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaactcatgaag |
5484235 |
T |
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| Q |
315 |
aacggcaataggaaggaacattgagatctttattgatgttaaggagtgc |
363 |
Q |
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| T |
5484234 |
aaaggcaattggatggatctttgagatctattttgatgttaaggagtgc |
5484186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 5489717 - 5489554
Alignment:
| Q |
23 |
gggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagttattgt |
122 |
Q |
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||||||||||| || || |||| ||| || |||||||| ||||| |||||||||||| ||||||||||||||||||||| | ||||| |||| | | | |
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| T |
5489717 |
gggaccattccagtgaaatttgcattggacaagtcaaggtaattgagcatattgagataaccaataaattctggaatgggagctccttcaaagtcactat |
5489618 |
T |
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| Q |
123 |
aactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttatctcaccgccaaa |
186 |
Q |
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| T |
5489617 |
agcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaa |
5489554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 5466925 - 5466771
Alignment:
| Q |
22 |
agggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagttattg |
121 |
Q |
| |
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|||||||||||| | ||| |||| || ||||| ||||| ||||| ||| |||||||||||||||||||||| ||||||| || ||||||||| | ||| |
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| T |
5466925 |
agggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattcaggaatgggaactcctttgaaatcatta |
5466826 |
T |
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| Q |
122 |
taactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttatct |
176 |
Q |
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| T |
5466825 |
tagctcaagtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatct |
5466771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 5481395 - 5481337
Alignment:
| Q |
305 |
acccatgaagaacggcaataggaaggaacattgagatctttattgatgttaaggagtgc |
363 |
Q |
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|||||||||||| |||||| | ||||| ||||||||||||| |||| |||||||||||| |
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| T |
5481395 |
acccatgaagaaaggcaattgtaaggatcattgagatcttttttgacgttaaggagtgc |
5481337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 5489429 - 5489371
Alignment:
| Q |
305 |
acccatgaagaacggcaataggaaggaacattgagatctttattgatgttaaggagtgc |
363 |
Q |
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| T |
5489429 |
acccatgaagaaaggcaatttgaaggatccttgagatcttttttgattttaaggagtgc |
5489371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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