View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_56 (Length: 351)
Name: NF15163_low_56
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 12242640 - 12242327
Alignment:
| Q |
18 |
gcatgttcgggtgacacatgtcgtgttggtcactgacacatataattatactgaaattatgtgaatctctcggattattagctgtgtcggtgttcgtgtc |
117 |
Q |
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| T |
12242640 |
gcatgttccggtgacacatgtcgtgttggtcaccgacacatataattatactgaaattatgtgaatctctcggattattagctgtgtcggtgttcgtgtc |
12242541 |
T |
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| Q |
118 |
gtgtccggtgtcgatgcttcataggtgaaaaaatatttaaaagcatagaattagaacttgtgatctctcatttttctaattgtttgatgtttttattgat |
217 |
Q |
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| T |
12242540 |
gtgtccggtgtccgtgcttcataggtgaaaaaatattgaaaagcatagaattagaacttgtgatctctcatttttctaattgtttgatgtttttattgat |
12242441 |
T |
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| Q |
218 |
taggttttgacagtgtttctggctgcaagttgctcagcagcattagcagttgcaacaatggaatgtaatgggaaccctcatgctcctttgtgtagcaaaa |
317 |
Q |
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| T |
12242440 |
taggttttgacagtgtttctggctgcaagttgctcagcagcattagcagttgcaacaatggaatgtaatggaaaccctcatgctcctttgtgtagcaaaa |
12242341 |
T |
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| Q |
318 |
gcatatttggtgtt |
331 |
Q |
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| T |
12242340 |
gcatatttggtgtt |
12242327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 25361942 - 25361867
Alignment:
| Q |
48 |
cactgacacatataattatactgaaattatgtgaatctctcggattattagctgtgtcggtgttcgtgtcgtgtccg |
124 |
Q |
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| T |
25361942 |
cactgacacatataattacactg-aattatgtgattttctcaaattatcagtggtgtcggcgtccgtgtcgtgtccg |
25361867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 14028018 - 14027983
Alignment:
| Q |
94 |
attagctgtgtcggtgttcgtgtcgtgtccggtgtc |
129 |
Q |
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| T |
14028018 |
attagctgtgtcggtgtccgtgtcgtgtccggtgtc |
14027983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 9778544 - 9778476
Alignment:
| Q |
60 |
taattatactgaaattatgtgaatctctcggattattagctgtgtcggtgttcgtgtcgtgtccggtgtc |
129 |
Q |
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| T |
9778544 |
taattatactgaa-ttatgtgattttttcaaattatcagctgtgtcagtgtccgtgtcgtgtccggtgtc |
9778476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 6471897 - 6471969
Alignment:
| Q |
53 |
acacatataattatactgaaattatgtgaatctctcggattattagctgtgtcggtgttcgtgtcgtgtccggt |
126 |
Q |
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| T |
6471897 |
acacatataattacactg-aattatgtgattttctcaaattattagccgtgtcagtgtccgtgtcatgtccggt |
6471969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 24362208 - 24362263
Alignment:
| Q |
51 |
tgacacatataattatactgaaattatgtgaatctctcggattattagctgtgtcgg |
107 |
Q |
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| T |
24362208 |
tgacacatataattacactg-aattatgtgattctctcaaattattagcggtgtcgg |
24362263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 23718084 - 23718021
Alignment:
| Q |
46 |
gtcactgacacatataattatactgaaattatgtgaatctctcggattattagctgtgtcggtgt |
110 |
Q |
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| T |
23718084 |
gtcaccgacacatataattacactg-aattatgtgactttctcaaattattagcggtgtcggtgt |
23718021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 24105756 - 24105693
Alignment:
| Q |
46 |
gtcactgacacatataattatactgaaattatgtgaatctctcggattattagctgtgtcggtgt |
110 |
Q |
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| T |
24105756 |
gtcaccgacacatataattacactg-aattatgtgactttctcaaattattagcggtgtcggtgt |
24105693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 44860372 - 44860297
Alignment:
| Q |
52 |
gacacatataattatactgaaattatgtgaatctctcggattattagctgtgtcggtgttcgtgtcgtgtccggtgt |
128 |
Q |
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| T |
44860372 |
gacacatataattacactgaa-ttatgcgattttctcaaattattagcggtgtcagtgtccgtgtcgtgtctggtgt |
44860297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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