View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_63 (Length: 339)

Name: NF15163_low_63
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_63
NF15163_low_63
[»] chr4 (2 HSPs)
chr4 (163-323)||(4606103-4606263)
chr4 (77-122)||(23084107-23084152)
[»] chr7 (7 HSPs)
chr7 (76-122)||(32457185-32457231)
chr7 (76-135)||(41014000-41014059)
chr7 (76-122)||(584861-584907)
chr7 (76-122)||(1694395-1694441)
chr7 (76-122)||(15076155-15076201)
chr7 (76-137)||(27262576-27262637)
chr7 (76-136)||(41648642-41648702)
[»] chr8 (3 HSPs)
chr8 (76-124)||(45509629-45509677)
chr8 (76-122)||(1030771-1030817)
chr8 (76-122)||(38389881-38389927)
[»] chr1 (7 HSPs)
chr1 (76-132)||(4051445-4051500)
chr1 (76-122)||(1053297-1053343)
chr1 (76-122)||(31880247-31880293)
chr1 (76-122)||(50846456-50846502)
chr1 (76-122)||(51680857-51680903)
chr1 (76-121)||(33417941-33417986)
chr1 (76-124)||(35864763-35864811)
[»] chr3 (7 HSPs)
chr3 (76-135)||(31311343-31311402)
chr3 (77-124)||(43974007-43974054)
chr3 (76-122)||(43140527-43140573)
chr3 (76-122)||(43862531-43862577)
chr3 (76-122)||(45300874-45300920)
chr3 (77-122)||(34330772-34330817)
chr3 (76-132)||(8398893-8398949)
[»] scaffold2128 (1 HSPs)
scaffold2128 (76-122)||(612-658)
[»] chr5 (3 HSPs)
chr5 (76-122)||(24363046-24363092)
chr5 (77-129)||(6670814-6670866)
chr5 (76-124)||(27581877-27581925)
[»] chr2 (2 HSPs)
chr2 (84-122)||(43568935-43568973)
chr2 (77-121)||(32144589-32144633)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 4606103 - 4606263
Alignment:
Q  163 cttttattaccatttgggcccttaaccaccgcctctatctcgactccttccatcgttggtctatcatgaacaattttagagaactgataatgcactagca 262  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4606103 cttttagtaccatttgggcccttaaccaccgcctctatctcgactccatccatcgttggtctatcatgaacaattttagagaactgataatgcactagca 4606202  T
Q  263 tagtgaatacccatgtctcagcaagctatcactcaaacaagagttcgatttccgcattaaa 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4606203 tagtgaatacccatgtctcagcaagctatcactcaaacaagagttcgatttccgcattaaa 4606263  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 23084107 - 23084152
Alignment:
Q  77 taaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    |||||| ||||||| ||||||| ||||||| |||||||||||||||    
T  23084107 taaaataaaaagttggaatatttataaggaccaaaaacatatttaa 23084152  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 32457185 - 32457231
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  32457185 ctaaaatgaaaagttagtatatttataaggaccaaaaacatatttaa 32457231  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 41014000 - 41014059
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatcttaaaatatat 135  Q
    |||||| |||||||||  ||||| ||||||| ||||||||||||||| | ||||||||||    
T  41014000 ctaaaacgaaaagttaatatatttataaggaccaaaaacatatttaaccctaaaatatat 41014059  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 584907 - 584861
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||||  ||||| ||||||| |||||||||||||||    
T  584907 ctaaaatgaaaagttaatatatttataaggaccaaaaacatatttaa 584861  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 1694441 - 1694395
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    |||||||||||| |||| ||||| ||||||| |||||||||||||||    
T  1694441 ctaaaatgaaaaattagtatatttataaggaccaaaaacatatttaa 1694395  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 15076201 - 15076155
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||||  ||||| ||| |||||||||||||||||||    
T  15076201 ctaaaatgaaaagttaacatatttatagggaacaaaaacatatttaa 15076155  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 27262576 - 27262637
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatcttaaaatatatac 137  Q
    |||||| ||||||||   ||||| |||| |||||||| ||||||||| ||||||||||||||    
T  27262576 ctaaaacgaaaagttgttatatttataaagaacaaaatcatatttaaccttaaaatatatac 27262637  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 41648642 - 41648702
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatcttaaaatatata 136  Q
    |||||||||||||||   ||||| ||| ||||||||||||||||||| |  ||||||||||    
T  41648642 ctaaaatgaaaagttgacatatttatatggaacaaaaacatatttaacccaaaaatatata 41648702  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 45509677 - 45509629
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatc 124  Q
    ||||||||||||||||| ||||| ||| ||| |||||||||||||||||    
T  45509677 ctaaaatgaaaagttagtatatttatagggaccaaaaacatatttaatc 45509629  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 1030817 - 1030771
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||    
T  1030817 ctaaaatgaaaagttggtatatttataaggatcaaaaacatatttaa 1030771  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 38389881 - 38389927
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    |||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  38389881 ctaaaacgaaaagttagtatatttataaggatcaaaaacatatttaa 38389927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 4051445 - 4051500
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatcttaaaata 132  Q
    |||||| |||||||||| ||||| ||||||| ||||||||||||||| |||||||||    
T  4051445 ctaaaacgaaaagttagtatatttataaggaccaaaaacatatttaa-cttaaaata 4051500  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 1053343 - 1053297
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    |||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  1053343 ctaaaacgaaaagttagtatatttataaggaccaaaaacatatttaa 1053297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 31880293 - 31880247
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||    
T  31880293 ctaaaatgaaaagttggtatatttataaggaccaaaaacatatttaa 31880247  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 50846502 - 50846456
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||||| ||||  ||||||| |||||||||||||||    
T  50846502 ctaaaatgaaaagttagtatatctataaggaccaaaaacatatttaa 50846456  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 51680903 - 51680857
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||    
T  51680903 ctaaaatgaaaagttggtatatttataaggatcaaaaacatatttaa 51680857  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 33417941 - 33417986
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatattta 121  Q
    |||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  33417941 ctaaaacgaaaagttagcatatttataaggatcaaaaacatattta 33417986  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 35864763 - 35864811
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatc 124  Q
    |||||| |||||||| | ||||| ||||||| |||||||||||||||||    
T  35864763 ctaaaacgaaaagttggtatatttataaggaccaaaaacatatttaatc 35864811  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 31311343 - 31311402
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatcttaaaatatat 135  Q
    ||||||||||||||| | ||||| ||| ||| ||||||||||||||| | ||||||||||    
T  31311343 ctaaaatgaaaagtttgtatatttatagggaccaaaaacatatttaaccctaaaatatat 31311402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 43974054 - 43974007
Alignment:
Q  77 taaaatgaaaagttagaatattgataaggaacaaaaacatatttaatc 124  Q
    |||||||||||||| | ||||| ||||||| |||||||||||||||||    
T  43974054 taaaatgaaaagttggtatatttataaggaccaaaaacatatttaatc 43974007  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 43140573 - 43140527
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||||| ||||| ||| ||| |||||||||||||||    
T  43140573 ctaaaatgaaaagttagtatatttatagggaccaaaaacatatttaa 43140527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 43862577 - 43862531
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||    
T  43862577 ctaaaatgaaaagttggtatatttataaggaccaaaaacatatttaa 43862531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 45300920 - 45300874
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    |||||| |||||||||||||||| ||| ||| |||||||||||||||    
T  45300920 ctaaaacgaaaagttagaatatttatagggatcaaaaacatatttaa 45300874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 34330817 - 34330772
Alignment:
Q  77 taaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||| |||||||| | ||||| |||||||||||||||||||||||    
T  34330817 taaaacgaaaagtttgtatatttataaggaacaaaaacatatttaa 34330772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 8398949 - 8398893
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatcttaaaata 132  Q
    |||||| |||||||| | ||||| ||||||| ||||||||||||||| | |||||||    
T  8398949 ctaaaacgaaaagttggcatatttataaggaccaaaaacatatttaaccctaaaata 8398893  T

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Target: scaffold2128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2128
Description:

Target: scaffold2128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 658 - 612
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||| | ||||| ||||||| |||||||||||||||    
T  658 ctaaaatgaaaagttggtatatttataaggaccaaaaacatatttaa 612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 24363046 - 24363092
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||||||||||||| ||||| ||| ||| |||||||||||||||    
T  24363046 ctaaaatgaaaagttagtatatttatatggaccaaaaacatatttaa 24363092  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 6670814 - 6670866
Alignment:
Q  77 taaaatgaaaagttagaatattgataaggaacaaaaacatatttaatcttaaa 129  Q
    ||||||||||| || | ||||| |||||||  |||||||||||||||||||||    
T  6670814 taaaatgaaaactttgtatatttataaggataaaaaacatatttaatcttaaa 6670866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 27581877 - 27581925
Alignment:
Q  76 ctaaaatgaaaagttagaatattgataaggaacaaaaacatatttaatc 124  Q
    |||||| |||||||| | ||||| ||| |||||||||||||||||||||    
T  27581877 ctaaaacgaaaagtttgtatatttatagggaacaaaaacatatttaatc 27581925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 43568935 - 43568973
Alignment:
Q  84 aaaagttagaatattgataaggaacaaaaacatatttaa 122  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  43568935 aaaagtttgaatatttataaggaacaaaaacatatttaa 43568973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 32144589 - 32144633
Alignment:
Q  77 taaaatgaaaagttagaatattgataaggaacaaaaacatattta 121  Q
    ||||||||||||||| |||||| ||||| | ||||||||||||||    
T  32144589 taaaatgaaaagttaaaatatttataagcatcaaaaacatattta 32144633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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