View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_66 (Length: 332)
Name: NF15163_low_66
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_66 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 53090149 - 53090451
Alignment:
| Q |
26 |
tgagaaatgttatcaacacacattctaacatacattttccaacaatgtgtgttgcaagcatttctcttgtcacgctatattgaaaacacaaatgaattta |
125 |
Q |
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| T |
53090149 |
tgagaaatgttatcaacacacgttctaacatatacttttcaataatgtgtgttgctagcatttctcttgtcacactatattgaaagcacaaatgaattta |
53090248 |
T |
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| Q |
126 |
cttatatattgtgcacagacaaaagtaaaaattaaaagcagaannnnnnnnnncccttcacttcctttattcaattagacggtgaagaaagcaaaagaca |
225 |
Q |
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| T |
53090249 |
cttatatatagtgcacagacaaaagtaaaaattaaaagcagaattttttttt---cttcacttcctttattcaattagacggtgaagaaagcaaaagaca |
53090345 |
T |
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| Q |
226 |
caaatacaagcaagcacatgacacactctgcaaaattgatgacaatctgcacttgtagtttgtaccctgtttcnnnnnnnnntcataggataggagaatc |
325 |
Q |
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| T |
53090346 |
caaatacaagcaagcacatgacacactctgc-aaattgatgacaatctgcacttgtagtttgtaccctgtttcaaaaaaaaaacataggataggagaatc |
53090444 |
T |
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| Q |
326 |
ttattga |
332 |
Q |
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| T |
53090445 |
ttattga |
53090451 |
T |
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