View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_68 (Length: 330)
Name: NF15163_low_68
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 49998489 - 49998188
Alignment:
| Q |
13 |
gagatgaacaaatacaattgtccattggtaattttatccgggtgcaatcatcattctcaaccaattatatttggctgtgctttgatgtcggatgaaacaa |
112 |
Q |
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| T |
49998489 |
gagaagaacaaatacaattgtccattggtaattttctccgggtgcaatcatcattctcaaccaattatatttggttgtgctttgatgtcggatgaaacaa |
49998390 |
T |
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| Q |
113 |
ttgagaactataagtgggtcttaaaatctttttcagaagcaatgcgaaataaacatcccgaagttgttgtgacaaatggggatgaggtcatgatggaggc |
212 |
Q |
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| T |
49998389 |
ttgagacctataagtgggtcttaaaatctttttcagaagcaatgcgaaataaacatcccaaagttgttgtgacaaatggggatgaggtcatgatggaggc |
49998290 |
T |
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| Q |
213 |
tataaaacatgtttttccggattcatgtcatcaactatgtgtttggaacttgcacaagaatgcatgtaaaaatgttgagagttcttcatttttggaggat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49998289 |
tataaaacatgtttttccggattcatgtcatcaactatgtgtttggaacttgcacaagaatgcatgtaaaaatgtcgagagttcttcatttttggaggat |
49998190 |
T |
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| Q |
313 |
tt |
314 |
Q |
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|| |
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| T |
49998189 |
tt |
49998188 |
T |
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