View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_70 (Length: 329)
Name: NF15163_low_70
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_70 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 22011322 - 22011616
Alignment:
| Q |
19 |
caactgagaaaattattatnnnnnnntccaacttagagaataaacaaaagccaaaaggaaacaaacagtgagtcttcctgaatgaattaaaactgattat |
118 |
Q |
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| T |
22011322 |
caactgagaaaattattataaaaaaatccaacttagagaataaacaaaagccaaaaggaaacaaacagtaagtcttcctgaatgaattaaaactgattat |
22011421 |
T |
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| Q |
119 |
caaacccttgacatgaatttacccatcatataccaatatttaccaccaatagttgtgaattgtattgagttgctgccattttaatagagtctccaaatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22011422 |
caaacccttgacatgaatttacccatcatataccaatatttaccaccaatagttgtgaattgtattgagttgctgccattttaatagagtctccaaatca |
22011521 |
T |
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| Q |
219 |
actactaggaatgaatacccaaattttgaattaggacagattaagtgaaacgcaccgtttcatgtttaacataataaataataaaataattgtac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22011522 |
actactaggaatgaatacccaaattttgaattaggacagattaagtgaaacgcaccgtttcatgtttaacataatatataataaaataattgtac |
22011616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 44313249 - 44313543
Alignment:
| Q |
19 |
caactgagaaaattattatnnnnnnntccaacttagagaataaacaaaagccaaaaggaaacaaacagtgagtcttcctgaatgaattaaaactgattat |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44313249 |
caactgagaaaattattataaaaaaatccaacttagagaataaacaaaagccaaaaggaaacaaacagtaagtcttcctgaatgaattaaaactgattat |
44313348 |
T |
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| Q |
119 |
caaacccttgacatgaatttacccatcatataccaatatttaccaccaatagttgtgaattgtattgagttgctgccattttaatagagtctccaaatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44313349 |
caaacccttgacatgaatttacccatcatataccaatatttaccaccaatagttgtgaattgtattgagttgctgccattttaatagagtctccaaatca |
44313448 |
T |
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| Q |
219 |
actactaggaatgaatacccaaattttgaattaggacagattaagtgaaacgcaccgtttcatgtttaacataataaataataaaataattgtac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44313449 |
actactaggaatgaatacccaaattttgaattaggacagattaagtgaaacgcaccgtttcatgtttaacataatatataataaaataattgtac |
44313543 |
T |
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