View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_73 (Length: 325)
Name: NF15163_low_73
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 8328940 - 8329241
Alignment:
| Q |
16 |
gttatctattctgtctttgtttggtggctccaattcacaccaacaaacactttcttctcaaaccctaatatgacatccctcgatttggcctacccaagtt |
115 |
Q |
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| T |
8328940 |
gttatctattatgtctttgtttggtggctccaattcacaccaacaaacactttcttctcaaaccctaatatgacatccctcgatttggcctacccaagtt |
8329039 |
T |
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| Q |
116 |
atagacaagctaggcttttgtctaagacctcaaaatatatatttttctttttacctattatacacaaattctcatatttatttatggagctaaaattttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8329040 |
atagacaagctaggcttttgtctaagacctcaaaatatatatttttctttttacctattatacacaaattctcatatttatttatggagctaaaattttc |
8329139 |
T |
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| Q |
216 |
aagagaaatgatataagtgaaaaatgatacaccaattgatatacttaattatataaaaatattttattcgttttaaaatgtgtatattgcttatagaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8329140 |
aagagaaatgatataagtgaaaaatgatacaccaattgatatacttaattatataaaaatattttattcgttttaaaatgtgtatattgcttatagaata |
8329239 |
T |
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| Q |
316 |
at |
317 |
Q |
| |
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|| |
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|
| T |
8329240 |
at |
8329241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 53283565 - 53283685
Alignment:
| Q |
156 |
atttttctttttacctattatacacaaattctcatatttatttatggagctaaaattttcaagagaaatgatataagtgaaaaatgatacaccaattgat |
255 |
Q |
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| T |
53283565 |
atttttttttttacctattatacacaatatctcat-tttatt-atggagctaatttttt-aagagagataatacaaatgaaaaatgatacatcaatcgat |
53283661 |
T |
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| Q |
256 |
atacttaattatataaaaatattt |
279 |
Q |
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| T |
53283662 |
atacttaattatataaaaatattt |
53283685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 16527165 - 16527328
Alignment:
| Q |
163 |
tttttacctattatacacaaattctcatatttatttatggagctaaaattttcaagagaaatgatataagtgaaaaatgatacaccaattgat------- |
255 |
Q |
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||||||||||||||| ||| |||||||||||||||| ||||| || ||| ||||||||| ||| ||||||||||||||| |||||||||| |
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| T |
16527165 |
tttttacctattatatccaatacctcatatttatttatgaagctataaattttaagagaaataatacaagtgaaaaatgataaaccaattgatatactta |
16527264 |
T |
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| Q |
256 |
atacttaattatat--aaaaatattttattcgttttaaaatgtgtatattgcttatagaataat |
317 |
Q |
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|||||||||||||| ||||| | || |||| |||| ||||| ||||||||||||||||||||| |
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| T |
16527265 |
atacttaattatattaaaaaaaacttaattcattttcaaatgcgtatattgcttatagaataat |
16527328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 9575684 - 9575606
Alignment:
| Q |
186 |
ctcatatttatttatggagctaaaattttcaagagaaatgatataagtgaaaaatgatacaccaattgatatacttaat |
264 |
Q |
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| T |
9575684 |
ctcatatttatttatgaagcaataaattttaagagaaataatacaagtggaaaatgatacactaattgatatacttaat |
9575606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 2805692 - 2805748
Alignment:
| Q |
186 |
ctcatatttatttatggagctaaaattttcaagagaaatgatataagtgaaaaatga |
242 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| || ||||||||||||| |
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| T |
2805692 |
ctcatatttatttatggagctaaattttttaagagaaatattacaagtgaaaaatga |
2805748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 33670459 - 33670398
Alignment:
| Q |
256 |
atacttaattatataaaaatattttattcgttttaaaatgtgtatattgcttatagaataat |
317 |
Q |
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|||||||||||||| |||| | || |||| |||| |||||||||||||| |||||||||||| |
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| T |
33670459 |
atacttaattatattaaaaaacttaattcattttcaaatgtgtatattgtttatagaataat |
33670398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 9160108 - 9160040
Alignment:
| Q |
246 |
accaattgatatacttaattatataaaaatattttattcgttttaaaatgtgtatattgcttatagaat |
314 |
Q |
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||||||||||||||||||||||| |||| | || |||| |||| ||||| |||||||| ||||||||| |
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| T |
9160108 |
accaattgatatacttaattatacaaaaggacttaattcttttttaaatgcgtatattgtttatagaat |
9160040 |
T |
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