View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_75 (Length: 320)

Name: NF15163_low_75
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_75
NF15163_low_75
[»] chr3 (1 HSPs)
chr3 (1-305)||(43453811-43454110)
[»] chr4 (3 HSPs)
chr4 (30-305)||(45140814-45141091)
chr4 (248-302)||(21280439-21280493)
chr4 (248-302)||(21280138-21280192)
[»] chr6 (1 HSPs)
chr6 (247-302)||(10966268-10966323)
[»] chr8 (1 HSPs)
chr8 (248-302)||(36402304-36402358)
[»] chr1 (2 HSPs)
chr1 (248-302)||(5491226-5491280)
chr1 (201-246)||(13415728-13415773)
[»] scaffold0006 (1 HSPs)
scaffold0006 (201-246)||(285398-285443)
[»] chr7 (1 HSPs)
chr7 (250-302)||(33261316-33261368)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 43453811 - 43454110
Alignment:
Q  1 ttcatcggaaagaagccattaaatagttgagataagttgaaatgggtaaaaatggatacggcagtaaaaagtgaattgattgctttgttaagatatatat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43453811 ttcatcggaaagaaaccattaaatagttgagataagttgaaatgggcaaaaatggatacggcagtaaaaagtgaattgattgttttgttaagatatatat 43453910  T
Q  101 tgatttggcatttttcctcctctccatttgacttagca-aaagttatttacaacacatgaaaagggggaattaatgtttgaagaagaataagaannnnnn 199  Q
    ||||||||||||||||||||||||||      |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||           
T  43453911 tgatttggcatttttcctcctctcca------ttagcagaaagttatttacagcacatgaaaagggggaattaatgtttgaagaagaataagattttttt 43454004  T
Q  200 naatttagggttcataatttaatctcagatttatgatttgagtgcatgataagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgtt 299  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||    
T  43454005 taatttagggttcataatttgatctcagatttatgatttgagtgcatgataagtgaaaatcagatgaggataatattgaatgtgaaaagttgcacatatt 43454104  T

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Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 45140814 - 45141091
Alignment:
Q  30 agataagttgaaatgggtaaaaatggatacggcagtaaaaagtgaattgattgctttgttaagatatat--attgatttggcatttttcctcctctccat 127  Q
    |||||| |||||||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  45140814 agataaattgaaatgggcaaaaatggatacgacagtcaaaagtgagttgattgctttgttaagatatatacattgatttggca-ttttcctcctctccat 45140912  T
Q  128 ttgacttagca-aaagttatttacaacacatgaaaagggggaattaatgtttgaagaagaataagaannnnnnnaatttagggttcataatttaatctca 226  Q
    ||| |||  || ||||||||||| | |||||||||||| |||||| |||||||||||||||||||||       ||||||||||||||||||| || |||    
T  45140913 ttggcttcacataaagttatttaaagcacatgaaaaggaggaattgatgtttgaagaagaataagaa-atttttaatttagggttcataatttgatatca 45141011  T
Q  227 ga-tttatgatttgagtgcatgataagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgttctctct 305  Q
    || |||||| ||||||||||||||||||||||  || || ||||||||||||||| |||||||||||||||||| |||||    
T  45141012 gattttatggtttgagtgcatgataagtgaaattcaattaaggataatattgaatgtgaaaagttgcacatgttatctct 45141091  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 21280493 - 21280439
Alignment:
Q  248 ataagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgttctc 302  Q
    ||||||||||||||  ||||||||||||||||| |||||||||  ||||||||||    
T  21280493 ataagtgaaaaccatctgaggataatattgaatgtgaaaagtttgacatgttctc 21280439  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 21280192 - 21280138
Alignment:
Q  248 ataagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgttctc 302  Q
    ||||||||||||||  | ||||||||||||||| |||||||||  ||||||||||    
T  21280192 ataagtgaaaaccatctcaggataatattgaatgtgaaaagtttgacatgttctc 21280138  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 10966268 - 10966323
Alignment:
Q  247 gataagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgttctc 302  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  10966268 gataattgaaaaccagttgaggataatattgaatgtgaaaagttgcacatattctc 10966323  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 36402358 - 36402304
Alignment:
Q  248 ataagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgttctc 302  Q
    ||||||||||||||  ||||||||||||||||| |||||||||  ||||||||||    
T  36402358 ataagtgaaaaccatctgaggataatattgaatgtgaaaagtttgacatgttctc 36402304  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 5491226 - 5491280
Alignment:
Q  248 ataagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgttctc 302  Q
    ||||||||||||||  ||||||||||||||||| |||||||||  ||||||||||    
T  5491226 ataagtgaaaaccatctgaggataatattgaatgtgaaaagtttgacatgttctc 5491280  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 13415773 - 13415728
Alignment:
Q  201 aatttagggttcataatttaatctcagatttatgatttgagtgcat 246  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||    
T  13415773 aatttagggttcataatttgatatcagatttatggtttgagtgcat 13415728  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 285443 - 285398
Alignment:
Q  201 aatttagggttcataatttaatctcagatttatgatttgagtgcat 246  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||    
T  285443 aatttagggttcataatttgatatcagatttatggtttgagtgcat 285398  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 33261316 - 33261368
Alignment:
Q  250 aagtgaaaaccagttgaggataatattgaatttgaaaagttgcacatgttctc 302  Q
    |||||||| ||| |||||||||||||||||| |||||||||  ||||||||||    
T  33261316 aagtgaaagccatttgaggataatattgaatgtgaaaagttagacatgttctc 33261368  T

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