View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_76 (Length: 319)
Name: NF15163_low_76
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 45130788 - 45130494
Alignment:
| Q |
9 |
agcagagattgatgaggaaggctttcaagctctctttctgaaccataaatccatgaccctggtgatcttgttggtgttggaacttctacattcattattt |
108 |
Q |
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| T |
45130788 |
agcaaagattgatgaggaaggctttcaagctctctttctgaaccataaatccatgaccctggtgatcttgttggtgttggaacttctacattcattattt |
45130689 |
T |
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| Q |
109 |
gcttattttctatagtgttctgtctcttacaccaaagaaatacaacactagaacatatacatacacacgcacatagtagaaacatgtaccacataacctt |
208 |
Q |
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| T |
45130688 |
gcttattttctatagtgttctgtctcttacaccaaagaaatacaacactagaacatatacatacacacgcacatagtagaaacatgtaccacataacctt |
45130589 |
T |
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| Q |
209 |
ggaagtccagttatacacttcacctgtgttattttcaattggataaatatagtaacgagtaacaattcctaaaaggaggagaaacatgatgaacg |
303 |
Q |
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| T |
45130588 |
ggaagtccagttatacacttcacctgtgttattttcaattggataaatatagtaacgagtaacaattcctaaaaggaggagaaacatgatgaacg |
45130494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 45113879 - 45113590
Alignment:
| Q |
14 |
agattgatgaggaaggctttcaagctctctttctgaaccataaatccatgaccctggtgatcttgttggtgttggaacttctacattcattatttgctta |
113 |
Q |
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| T |
45113879 |
agattgatgaggaaggctctcaagctctctttctgaaccataaatccatgaccctggtgatcttgctggtgttgaaacttctacattcattatatgctta |
45113780 |
T |
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| Q |
114 |
ttttctatagtgttctgtctcttacaccaaagaaatacaacactagaacatatacatacacacgcacatagtagaaacatgtaccacataaccttggaag |
213 |
Q |
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| T |
45113779 |
ttttctaatttgtttaatctcttcaaccaaagaaaaacaacactagaacatatacatatacatgaacaaaatgaaaacatgtaccacataaccccgtagg |
45113680 |
T |
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| Q |
214 |
tccagttatacacttcacctgtgttattttcaattggataaatatagtaacgagtaacaattcctaaaaggaggagaaacatgatgaacg |
303 |
Q |
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| T |
45113679 |
tccagttatatacttcacctgagttattttcaatcggataaatatagtaacgagtaacaattcctaaaaagaggagaaacatgacgaacg |
45113590 |
T |
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