View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_78 (Length: 313)
Name: NF15163_low_78
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 51857104 - 51856811
Alignment:
| Q |
1 |
aaatgaacattaacctctctcactacaagaaaaatttcatatccaaatttatctttccttctgattgaaattgattggtaagtggtaacccttcatttat |
100 |
Q |
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| T |
51857104 |
aaatgaacattaacctctctcactacaagaaaaatttcatatccaaatttatctttcctgctgattgaaatcgattggtaagtggtaacccttcatttat |
51857005 |
T |
|
| Q |
101 |
cttttgttccatatcccaattgaaacttttttcctttcaatttctttttattgctttctagatccaacgatgtgttgcatgataatctttattatgtttt |
200 |
Q |
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| T |
51857004 |
cttttgttccatatcccaattgaaacttttttcctttcaatt-ctttttattgctttctagatccaacgatgcgttgcatgataatctttattatgtttt |
51856906 |
T |
|
| Q |
201 |
ccatttgttgttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgt |
295 |
Q |
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| T |
51856905 |
ccatttgttgttattttgaagttccaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgt |
51856811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 27 - 295
Target Start/End: Complemental strand, 8946112 - 8945855
Alignment:
| Q |
27 |
aagaaaaatttcatatccaaatttatctttccttctgattgaaattgattggtaagtggtaacccttcatttatcttttgttccatatcccaattgaaac |
126 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946112 |
aagaaaaatttcatatccaaatttatctttcctgctgattgaaatcgattgctaagtggtaacccttcatttatcttttgttccatatcccaattgaaac |
8946013 |
T |
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| Q |
127 |
ttttttcctttcaatttctttttattgctttctagatccaacgatgtgttgcatgataatctttattatgttttccatttgttgttattttgaagtttca |
226 |
Q |
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| T |
8946012 |
ttttttcctttcaatttcattttattgctttctagatccaacgatgtgttgcatgataatctttatta-----------tgttgttattttgaagtttca |
8945924 |
T |
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| Q |
227 |
attataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgt |
295 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8945923 |
attataacggcttcaaagcacatcgtgaaggagctaaatgatttttagaacgacccttcattatcatgt |
8945855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 43263171 - 43263070
Alignment:
| Q |
185 |
atctttattatgttttccatttgttgttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggaccctt |
284 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||| ||||||||||||| |
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| T |
43263171 |
atctttattatgtttttcatttgttgttattttgaagtttcaattattacggcttcaaagtgcatcgtgaatgagctaaaggatttgtagaaggaccctt |
43263072 |
T |
|
| Q |
285 |
ca |
286 |
Q |
| |
|
|| |
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|
| T |
43263071 |
ca |
43263070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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