View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_79 (Length: 313)
Name: NF15163_low_79
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 90 - 298
Target Start/End: Complemental strand, 46884904 - 46884714
Alignment:
| Q |
90 |
ccctcatcaagtagatgaagaaagtgnnnnnnnctgacccaataaatcgtccaatgcagtcgtataagtgcttaatttgtgccaactccttaacaacttg |
189 |
Q |
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| T |
46884904 |
ccctcatcaagtagatgaagaaagtgaaaaaaactgacccagtaaatcgtccaatgcagtcgtataagtgcttaa------------------caacttg |
46884823 |
T |
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| Q |
190 |
ttcaacctccaaatttcatgatcgtcaaaagccatctccaattctgtcttgcagaaaccgaactggaattattgccattagaatccatattttccatcat |
289 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46884822 |
ttcaaactccaaatttcatgatcgtcaaaatccatctccaattctgtcttgcagaaaccggactggaattattgccattagaatccatattttccatcat |
46884723 |
T |
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