View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_8 (Length: 600)
Name: NF15163_low_8
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Complemental strand, 15514195 - 15513626
Alignment:
| Q |
16 |
aagaatgacattgcaaagcgcaatgaggaagaagaagcagccggagacaaatccagcaccacataacagcataccgaggcgtaaggcgaacctgcttatc |
115 |
Q |
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| T |
15514195 |
aagaatgacattgcaaagcgcaatgaggaagaagaagcagccggagacaaatccagcaccacataacagcataccgaggcgtaaggcgaacctgcttatc |
15514096 |
T |
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| Q |
116 |
tggttttcttcgtggatgaagaaggttgacatgaggcacatcgcgagggtggcggtcaaatcgaaacaacagcatgaccaacctgtgaacatgaaaatgt |
215 |
Q |
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| T |
15514095 |
tggttttcttcgtggatgaagaaggttgacatgaggcacatcgcgagggtggcggtcaaatcgaaacaacagcatgaccaacctgtgaacatgaaaatgt |
15513996 |
T |
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| Q |
216 |
ttgatttgggaagacaatttgattctgatgatgaaaaaactgagattggtatcaataaaagacatgttgccaatccaaagagggagtttatcttccccat |
315 |
Q |
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| T |
15513995 |
ttgatttgggaagacaatttgattctgatgatgaaaaaactgagatttgcatcaagaaaagacatgttgccaatccaaagagggagtttatcttccccat |
15513896 |
T |
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| Q |
316 |
cttatataaggcgttgatctgatcaatggggtaattattggccatggagcttgcttgagatagagagaatatacgtagtaatttcacttagattatttgc |
415 |
Q |
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| T |
15513895 |
cttatataaggcgttgatctgatcaatggggtaattattggccatggagcttgcttgagatagagagaatatacgtagtaatttcacttggattatttgc |
15513796 |
T |
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| Q |
416 |
tgattatgaaaaagttgtgtagagaggtgatatatgtagaggaaggaagaaagtttggtcgacatgacatgaggtccattgaaatgccctttccatttcc |
515 |
Q |
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| T |
15513795 |
tgattattaaaaagttgtgtagagaggtgatatatgtagaggaaggaagaaagtttggtcgatatgacatgaggtccattgaaatgccctttccatttcc |
15513696 |
T |
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| Q |
516 |
atcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattattgt |
585 |
Q |
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| T |
15513695 |
atcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattattgt |
15513626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 557
Target Start/End: Complemental strand, 15514319 - 15514277
Alignment:
| Q |
515 |
catcaacctaggttgtgatacaaacataatagtagacccttac |
557 |
Q |
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| T |
15514319 |
catcaacctaggttgcgatacaaacataatagtagacccttac |
15514277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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