View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_80 (Length: 312)
Name: NF15163_low_80
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 9829351 - 9829081
Alignment:
| Q |
19 |
gaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaag |
118 |
Q |
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| T |
9829351 |
gaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatctgatatgcaag |
9829252 |
T |
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| Q |
119 |
gtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaaagcaataaggaagattctgattttgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9829251 |
gtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaaagcaacgaggaagattctgattttgt |
9829152 |
T |
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| Q |
219 |
tgaagatctcttatgtgctgtaataccgaaaaggaaacggactcataatgtctttattagtgagtatgaaa |
289 |
Q |
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| T |
9829151 |
tgaagatctcttatgtgctgtaattccgaaaaggaaacggactcgtaatgtctttattagtgagtatgaaa |
9829081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 9755895 - 9755629
Alignment:
| Q |
19 |
gaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaag |
118 |
Q |
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| T |
9755895 |
gaaggcatgtctaatacttcacaagatgagtctaatagtgacgcagaat----tactagtaacaagaactcttattttcaagatgtgtctgatatgcaag |
9755800 |
T |
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| Q |
119 |
gtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaaagcaataaggaagattctgattttgt |
218 |
Q |
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| T |
9755799 |
gcagtgaatatatttctcagtcaacatgttctgcaacaaaaaagggaaagaatttgtactccaattatgatcaaagcagtgaggaagattctgattttgt |
9755700 |
T |
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| Q |
219 |
tgaagatctcttatgtgctgtaataccgaaaaggaaacggactcataatgtctttattagtgagtatgaaa |
289 |
Q |
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| T |
9755699 |
tgaagatctcttatgtgctgtaattccaaaaaggaaacggactcgtaatgtctttataagtgagtctgaaa |
9755629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 9814061 - 9813864
Alignment:
| Q |
19 |
gaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaag |
118 |
Q |
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|||| ||||||||||||||||| ||||| ||||| |||||||| ||||||| | || ||| |||| ||||| |||| |||||||||| ||||||||||| |
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| T |
9814061 |
gaaggcatgtctaataattcacgagatgagtctagcagtgacgcagaatctagttcgtgtagcaaggattcttatttgcaagatgtatctgatatgcaag |
9813962 |
T |
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| Q |
119 |
gtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaaagcaataaggaagattctgatttt |
216 |
Q |
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| T |
9813961 |
gtagtggaagtatttctctgtcaacaaattctgcagcagaaaagggaaagaatttttactccaattaggatcaaatcaatgacgaaaaatctgatttt |
9813864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 9804250 - 9804111
Alignment:
| Q |
76 |
agtaacaagaattctaattttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgt |
175 |
Q |
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|||| |||| ||||| |||| || ||||||| ||| |||||||||||| | ||| ||||||| |||| ||||||||||||||||| | ||||| || | |
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| T |
9804250 |
agtagcaaggattcttatttgcaggatgtatctgaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaagcg-aagaactttt |
9804152 |
T |
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| Q |
176 |
actccaattatgatcaaagcaataaggaagattctgatttt |
216 |
Q |
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|||||||||||||||||| |||| ||||| |||||||||| |
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| T |
9804151 |
actccaattatgatcaaaacaatgaggaaatttctgatttt |
9804111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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