View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_83 (Length: 304)
Name: NF15163_low_83
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 34128640 - 34128369
Alignment:
| Q |
14 |
cataggggagaaggatgaagaggtattagagagattagagagaaaaccttaagagaattatcataatcaagtaaaaatctttcnnnnnnnnagttatata |
113 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34128640 |
catagcggagaaggatgaagagctattagagagattagagagaaaaccttaagagaattatcataatcaagtaaaaatctttcttttttatagttatata |
34128541 |
T |
|
| Q |
114 |
tatatgtaaacgatgctagtagaacaagactgttgaaacttttagcacttatttatgctgaaaccattctctaaatctttttattgaattctatttaaac |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34128540 |
tat--gtaaacgatgctagtagaacaagactgttgaaacttttagcacttatttatgctggaaccattctctaaatctttttattgaattctatttaaac |
34128443 |
T |
|
| Q |
214 |
gggccatatttttatgtgcgcaaccatgaataaaattagtccattgttctagttatccttggtgagttaaaatg |
287 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34128442 |
gggccatatttttatgagtgcaaccatgaataaaattagtccattgttctagttatccttggtgagttaaaatg |
34128369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 34137260 - 34136991
Alignment:
| Q |
14 |
cataggggagaaggatgaagaggtattagagagattagagagaaaaccttaagagaattatcataatcaagtaaaaa-tctttcnnnnnnnnagttatat |
112 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
34137260 |
catagcggagaaggatgaagagctattagagagattagagc--aaaccttaagagaattatcataatcaagtaaaaaatctttcttttttatagttatat |
34137163 |
T |
|
| Q |
113 |
atatatgtaaacgatgctagtagaacaagactgttgaaacttttagcacttatttatgctgaaaccattctctaaatctttttattgaattctatttaaa |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34137162 |
atat--gtaaacgatgctagtagaacaagactgttgaaacttttagcacttatttatgctggaaccattctctaaatctttttattgaattctatttaaa |
34137065 |
T |
|
| Q |
213 |
cgggccatatttttatgtgcgcaaccatgaataaaattagtccattgttctagttatccttggtgagttaaaat |
286 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137064 |
cgggccatatttttatgagtgcaaccatgaataaaattagtccattgttctagttatccttggtgagttaaaat |
34136991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 2187262 - 2187395
Alignment:
| Q |
154 |
tttagcacttatttatgctgaaaccattctctaaatctttttattgaattctatttaaacgggccatatttttatgtgcgcaaccatgaataaaattagt |
253 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| | |||||| |||||||||||||| |
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| T |
2187262 |
tttagcacttatttatccttgaaccattctctaaatatttttattgaattctattttaacgggacatatttttatgagtgcaaccttgaataaaattagt |
2187361 |
T |
|
| Q |
254 |
ccattgttctagttatccttggtgagttaaaatg |
287 |
Q |
| |
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||||| ||||||||||| |||||||||||||||| |
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|
| T |
2187362 |
ccattattctagttatctttggtgagttaaaatg |
2187395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 2187023 - 2187148
Alignment:
| Q |
14 |
cataggggagaaggatgaagaggtattagagagattagagagaaaaccttaagagaattatcataatcaagtaaaaatctttcnnnnnnnnagttatata |
113 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||||| |||||||| || ||||||||||||||||||| |||||||| | | |||| |
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| T |
2187023 |
catagcggagaaggatgaagggttaatagagagattagagc--aaaccttaggaaaattatcataatcaagtaagaatctttc---tttttattgttata |
2187117 |
T |
|
| Q |
114 |
tatatgtaaacgatgctagtagaacaagact |
144 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
2187118 |
tatatgtaaacgatgctagtagaacaagact |
2187148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 1609025 - 1608956
Alignment:
| Q |
14 |
cataggggagaaggatgaagaggtattagagagattagagagaaaaccttaagagaattatcataatcaagt |
85 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||| |||| |||||||| || ||||||||||||||||| |
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|
| T |
1609025 |
catagcggagaaggatgaagggctaatagagagatt--agagcaaaccttaggaaaattatcataatcaagt |
1608956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 19633118 - 19633049
Alignment:
| Q |
14 |
cataggggagaaggatgaagaggtattagagagattagagagaaaaccttaagagaattatcataatcaagt |
85 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||| |||| |||||||| || || |||||||||||||| |
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| T |
19633118 |
catagcggagaaggatgaagggctaatagagagatt--agagcaaaccttaggaaaactatcataatcaagt |
19633049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 28388136 - 28388219
Alignment:
| Q |
200 |
aattctatttaaacgggccatatttttatgtgcgcaaccatgaataaaattagtccattgttctagttatccttggtgagttaaa |
284 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| | |||||||| |||||||| || |||||||||| ||||| | ||||||||| |
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|
| T |
28388136 |
aattctatttcaactggccatatttttatgagtttaaccatgagcaaaattag-cccttgttctagtaatcctggatgagttaaa |
28388219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 41314214 - 41314159
Alignment:
| Q |
154 |
tttagcacttatttatgctgaaaccattctctaaatctttttattgaattctattt |
209 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
41314214 |
tttagcacttatttatgcttgaaccattctctaaatatttttattgaattctattt |
41314159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 41314456 - 41314331
Alignment:
| Q |
14 |
cataggggagaaggatgaagaggtattagagagattagagagaaaaccttaagagaattatcataatcaagtaaaaatctttcnnnnnnnnagttatata |
113 |
Q |
| |
|
||||| ||| |||||||||| | || |||||||||||||| ||| |||| || |||||||||| |||||||| |||||||| | |||| |
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| T |
41314456 |
catagcggataaggatgaagggctaatagagagattagagc--aaatcttaggaaaattatcatactcaagtaagaatctttctttttataatagttata |
41314359 |
T |
|
| Q |
114 |
tatatgtaaacgatgctagtagaacaag |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
41314358 |
tatatgtaaacgatgctagtagaacaag |
41314331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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