View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_87 (Length: 289)
Name: NF15163_low_87
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 41703722 - 41703475
Alignment:
| Q |
23 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
122 |
Q |
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| T |
41703722 |
aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
41703623 |
T |
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| Q |
123 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca |
222 |
Q |
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| T |
41703622 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca |
41703523 |
T |
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| Q |
223 |
gctggtccaaaaagagatatatatgttaatatttgccaaacatgataatact |
274 |
Q |
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| T |
41703522 |
gctggtccaacaagag----atatgtttatatttgccaaacatgataatact |
41703475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 41467414 - 41467644
Alignment:
| Q |
18 |
gctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcg------ |
111 |
Q |
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| T |
41467414 |
gctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcagggcccctgatgaacttggctcttcaatcttc |
41467513 |
T |
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| Q |
112 |
---gtgattccagaacatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtt |
208 |
Q |
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| T |
41467514 |
acagtgattccaaaactagctttcttttcatgtattccttgaggcatagattgatcatcatcgt---caaggtttatgatctcaatctcattttccagtt |
41467610 |
T |
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| Q |
209 |
tcagacttccaccagctggtccaaaaagagatat |
242 |
Q |
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| T |
41467611 |
tcactcttccaccggctggtccaaaaagagatat |
41467644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
| Q |
23 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
85 |
Q |
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| T |
41513161 |
aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41513223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
| Q |
23 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
85 |
Q |
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| T |
41522096 |
aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41522158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 41513268 - 41513381
Alignment:
| Q |
127 |
gctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctg |
226 |
Q |
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| T |
41513268 |
gctttcttttcatgtactcctcgagacatagacccaacatcgtcgtcgtcaaggtatatgacctcaatattcttatccagtttcactcttccactagctg |
41513367 |
T |
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| Q |
227 |
gtccaaaaagagat |
240 |
Q |
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| T |
41513368 |
atacaaaaagagat |
41513381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 41506911 - 41506970
Alignment:
| Q |
18 |
gctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg |
77 |
Q |
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| T |
41506911 |
gctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg |
41506970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 33078159 - 33078232
Alignment:
| Q |
169 |
tcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat |
242 |
Q |
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| T |
33078159 |
tcgttgtcaaggtttatgacctccatatcctttttcaatttcaatcttccaccaactggtacaaaaagagatat |
33078232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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