View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_89 (Length: 286)
Name: NF15163_low_89
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 26832673 - 26832927
Alignment:
| Q |
15 |
agatagcaacatgatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccacttctattgtccctaacttcatactt |
114 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26832673 |
agatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactt |
26832772 |
T |
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| Q |
115 |
tatattcacacctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcacctttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832773 |
tatattcacacctttgcttctccatctacggcattctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcacctttt |
26832872 |
T |
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| Q |
215 |
aatacaaacttaaccctatcattagtccattgacttgctattaataattattaac |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832873 |
aatacaaacttaaccctatcattagtccattgacttgctattaataattattaac |
26832927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 26785987 - 26786178
Alignment:
| Q |
47 |
ctatgtttcattccctcctttaatgcacctgctttgtaaccacttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggc |
146 |
Q |
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| T |
26785987 |
ctatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggc |
26786086 |
T |
|
| Q |
147 |
attctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaacttaaccctatcattagtc |
241 |
Q |
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| T |
26786087 |
attcttcctgtaccaactcctgcaattttt-tttgttcacttgccacaatcattcacaatcacc-tttaatacaaatttatccc-atcattagtc |
26786178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 26791727 - 26791856
Alignment:
| Q |
47 |
ctatgtttcattccctcctttaatgcacctgctttgtaaccacttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggc |
146 |
Q |
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|||||||||||||||||||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
26791727 |
ctatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggc |
26791826 |
T |
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| Q |
147 |
attctacttgtaccaactcctgcatttttt |
176 |
Q |
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| T |
26791827 |
attcttcctgtacaaactcctgcatttttt |
26791856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 26822628 - 26822749
Alignment:
| Q |
47 |
ctatgtttcattccctcctttaatgcacctgctttgtaaccacttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggc |
146 |
Q |
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|||||||||||||||||||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
26822628 |
ctatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggc |
26822727 |
T |
|
| Q |
147 |
attctacttgtaccaactcctg |
168 |
Q |
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||||| | |||||||| ||||| |
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| T |
26822728 |
attcttcctgtaccaattcctg |
26822749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 41546333 - 41546207
Alignment:
| Q |
15 |
agatagcaacatgatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccacttctattgtccctaacttcatactt |
114 |
Q |
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|||| ||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| |||||||||||| ||||||| ||||| | |||||||| |
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| T |
41546333 |
agatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctattttcccttatctcatactt |
41546234 |
T |
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| Q |
115 |
tatattcacacctttgcttctccatct |
141 |
Q |
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||| || | ||||| ||||||||||| |
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| T |
41546233 |
tatgtttatgccttttcttctccatct |
41546207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 41917552 - 41917396
Alignment:
| Q |
20 |
gcaacatgatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccacttctattgtccctaacttcatactttatat |
119 |
Q |
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||||||||||||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
41917552 |
gcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcatactttatat |
41917453 |
T |
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| Q |
120 |
tcacacctttgcttctccatctacggcattctacttgtaccaactcctgcatttttt |
176 |
Q |
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|||| ||||||||| |||||| ||||||||| ||| |||||||||| |||||||| |
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| T |
41917452 |
tcactcctttgcttgcccatctttggcattctagttgcaccaactcctacatttttt |
41917396 |
T |
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