View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_93 (Length: 279)

Name: NF15163_low_93
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_93
NF15163_low_93
[»] chr3 (2 HSPs)
chr3 (21-266)||(3562302-3562547)
chr3 (181-231)||(9748894-9748944)
[»] chr5 (3 HSPs)
chr5 (189-244)||(34066064-34066119)
chr5 (175-265)||(22934420-22934512)
chr5 (210-265)||(21025700-21025757)
[»] chr2 (1 HSPs)
chr2 (175-265)||(23352368-23352460)
[»] chr1 (1 HSPs)
chr1 (198-265)||(30039593-30039661)
[»] chr6 (1 HSPs)
chr6 (193-244)||(17704529-17704580)
[»] chr7 (1 HSPs)
chr7 (181-244)||(7728120-7728181)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 3562547 - 3562302
Alignment:
Q  21 tgagaaacaggtggagaaactgcaaagggatgctggataacatgaacttcattgtaacgcacatatacagagaagggaatcaatgtgccgatagcttgac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  3562547 tgagaaacaggtggagaaactgcaaagggatgctggataacatgaacttcattgtaacacacatatacagagaagggaatcaatgtgccgatagcttggc 3562448  T
Q  121 agcatggggactgaatgctaattgtttaactgtgtgaacagatgtacccttgtttatcatagaatattatgttaagaatagacttggtatgcctaatttt 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3562447 agcatggggactgaatgctaattgtttaactgtgtggacagatgtacccttgtttatcagagaatattatgttaagaatagacttggtatgcctaatttt 3562348  T
Q  221 aggtttatcaacttctaggaggttaggtttatgtccccctcctttg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3562347 aggtttatcaacttctaggaggttaggtttatgtccccctcctttg 3562302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 9748944 - 9748894
Alignment:
Q  181 agaatattatgttaagaatagacttggtatgcctaattttaggtttatcaa 231  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  9748944 agaatattatgttaagaatagactaggtatgcctaactttaggtttatcaa 9748894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 34066119 - 34066064
Alignment:
Q  189 atgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt 244  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  34066119 atgttaagaatagacttggtatgcctaattataggtttagcaatttctaggaggtt 34066064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 22934420 - 22934512
Alignment:
Q  175 tatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt 265  Q
    ||||| ||||| |||||| || ||| | ||||||||||||||||||||||||||||| || ||||||| || ||| |||||||||||||||||    
T  22934420 tatcagagaattttatgtcaaaaatcgtcttggtatgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt 22934512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 21025757 - 21025700
Alignment:
Q  210 tgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt 265  Q
    |||||||||||||||||||||| || ||||||| || ||| |||||||||||||||||    
T  21025757 tgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt 21025700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 23352368 - 23352460
Alignment:
Q  175 tatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt 265  Q
    ||||| ||||| |||||| || ||| | ||||||||||||||||||||||||||||| || ||||||| || ||| |||||||||||||||||    
T  23352368 tatcagagaattttatgtcaaaaatcgtcttggtatgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt 23352460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 30039661 - 30039593
Alignment:
Q  198 atagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggtttatgtccccctccttt 265  Q
    ||||||||||||||||||| |||||||||||||||||||||| || || ||| | ||||||||||||||    
T  30039661 atagacttggtatgcctaactttaggtttatcaacttctaggtggttttggtatctgtccccctccttt 30039593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 17704529 - 17704580
Alignment:
Q  193 taagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt 244  Q
    |||||||||| || | ||||||||||||||||||||||||||| ||||||||    
T  17704529 taagaatagaattagcatgcctaattttaggtttatcaacttcgaggaggtt 17704580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 7728181 - 7728120
Alignment:
Q  181 agaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt 244  Q
    |||||| ||||| ||||||||||||||  ||||||| | |||||||||||| | ||||||||||    
T  7728181 agaatactatgtaaagaatagacttgg--tgcctaactataggtttatcaattcctaggaggtt 7728120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University