View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_96 (Length: 273)

Name: NF15163_low_96
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_96
NF15163_low_96
[»] chr2 (7 HSPs)
chr2 (18-173)||(12234188-12234343)
chr2 (24-265)||(7541301-7541542)
chr2 (23-259)||(12246264-12246500)
chr2 (26-185)||(14702486-14702645)
chr2 (28-245)||(11998620-11998838)
chr2 (23-191)||(12259499-12259670)
chr2 (84-197)||(16662912-16663025)
[»] chr1 (1 HSPs)
chr1 (23-259)||(52549787-52550023)
[»] chr7 (3 HSPs)
chr7 (140-245)||(6788706-6788811)
chr7 (133-180)||(8646067-8646114)
chr7 (141-256)||(27849012-27849127)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 12234188 - 12234343
Alignment:
Q  18 aatcacagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234188 aatcacagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaat 12234287  T
Q  118 gcatttactgctttagccttccttaggaatttcttgtcttcaatatggtaattctc 173  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234288 gcattcactgctttagccttccttaggaatttcttgtcttcaatatggtaattctc 12234343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 7541301 - 7541542
Alignment:
Q  24 agattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcattt 123  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||  | ||||| |||||| ||| ||||||||||||||||  ||||||| ||||     
T  7541301 agattcaatcttctcaatttcttctgaggagagtttcaaattaatatcatttttctttaaagcagttcccattttgtaaatgtagtcatccaatacattc 7541400  T
Q  124 actgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaatttttcaatctcttcagtttttaacctttctttgt 223  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||| || ||| |    || ||||||||||    
T  7541401 actgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgt 7541500  T
Q  224 agttggttatagtaatctcatttgaactgccagaagtattat 265  Q
      |||||||| ||||||| ||||||||||||||||| |||||    
T  7541501 gattggttatcgtaatcttatttgaactgccagaagcattat 7541542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 12246500 - 12246264
Alignment:
Q  23 cagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcatt 122  Q
    ||||||| |||||||| ||||||| ||| |||||||| | || ||||||| | ||||| |||||||||| ||||||||||||||||  |||||| |||||    
T  12246500 cagattcgatcttctcgatttcttgtgaagagagcttcacatcaatatcctttttctttaaagcatttcccattttgtaaatgtagtcatccaaagcatt 12246401  T
Q  123 tactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaatttttcaatctcttcagtttttaacctttctttg 222  Q
     |||||||| ||||||||||||||| ||| ||||||||||||  |||||||||| |||| ||||||||| |  || |||||| ||   ||||||||||||    
T  12246400 cactgctttggccttccttaggaatctctggtcttcaatatgaaaattctcagcctctttaattaatttgtttatttcttcacttgacaacctttctttg 12246301  T
Q  223 tagttggttatagtaatctcatttgaactgccagaag 259  Q
    || || ||||| ||||||||||||||| |||||||||    
T  12246300 taattagttattgtaatctcatttgaattgccagaag 12246264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 14702486 - 14702645
Alignment:
Q  26 attcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcatttac 125  Q
    |||||||||||| ||||||   ||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||  ||||||| |||| ||    
T  14702486 attcaatcttcttaatttccaatgaggtgagctttatattaatatcctttttcttcaaagcgtttctcattttgtaaatgaagtaatccaattcattcac 14702585  T
Q  126 tgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaat 185  Q
      |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14702586 cactttggccttccttaggaatttcatgtcttcaatatggtaattctcagcttcttgaat 14702645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 11998620 - 11998838
Alignment:
Q  28 tcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcatttactg 127  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||| |   ||| |||||||||||||||||||||||||||  |||||||||||| || |    
T  11998620 tcaattttctaaatttcttctgaggagagctttataataatatcctttgactttaaagcatttctcattttgtaaatgtagtcatccaatgcattcacag 11998719  T
Q  128 ctttagccttccttaggaatttcttgtcttcaatat-ggtaattctcagcttcttgaattaatttttcaatctcttcagtttttaacctttctttgtagt 226  Q
    |||  ||||||||||||||||||||||||||||||| || ||||||||||||||| |||  | |||| ||| ||||||  |   | ||| |||||||| |    
T  11998720 cttcggccttccttaggaatttcttgtcttcaatatgggaaattctcagcttctttaatctactttttaatttcttcatctgacatcctatctttgtaat 11998819  T
Q  227 tggttatagtaatctcatt 245  Q
    ||||||| |||||||||||    
T  11998820 tggttattgtaatctcatt 11998838  T

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Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 12259670 - 12259499
Alignment:
Q  23 cagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtc---ttcttcaaagcatttctcattttgtaaatgtagagatccaatgc 119  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||  |   ||||| ||||||||||||||||||||||||||   |||||||||    
T  12259670 cagattcaatcttctcaatttcttctgtggagagctttacgttaatatcctcctcattctttaaagcatttctcattttgtaaatgtaatcatccaatgc 12259571  T
Q  120 atttactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaattt 191  Q
    ||| ||||||||||  ||| |||||||||||||||| | ||||  |||||||||||||||||| ||||||||    
T  12259570 attcactgctttagatttctttaggaatttcttgtcgtaaatacagtaattctcagcttcttgtattaattt 12259499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 16663025 - 16662912
Alignment:
Q  84 agcatttctcattttgtaaatgtagagatccaatgcatttactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttga 183  Q
    |||||| |||| |||||||||| ||  ||| |||||||| | | | || |||||||||||||||||||  ||||||  |||||| | || ||||||||||    
T  16663025 agcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttga 16662926  T
Q  184 attaatttttcaat 197  Q
    || |||||||||||    
T  16662925 atcaatttttcaat 16662912  T

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Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 52550023 - 52549787
Alignment:
Q  23 cagattcaatcttctcaatttcttctgaggagagctttatattaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcatt 122  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||||   ||||| ||||||||||| |||||||||||||||  ||||||||||||    
T  52550023 cagattcgatcttctcaatttcttctgaggagagcttcaaattaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaatgcatt 52549924  T
Q  123 tactgctttagccttccttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaatttttcaatctcttcagtttttaacctttctttg 222  Q
       || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| || ||| ||   ||||||||||||    
T  52549923 ccatggtttagccttccttaggaatttcttgtcttcaatacagtaattctcagcttcttgaattaattttttaatgtcctcacttgacaacctttctttg 52549824  T
Q  223 tagttggttatagtaatctcatttgaactgccagaag 259  Q
    |  ||||| || ||||||| |||||||||||||||||    
T  52549823 tgattggtaattgtaatcttatttgaactgccagaag 52549787  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 6788706 - 6788811
Alignment:
Q  140 ttaggaatttcttgtcttcaatatggtaattctcagcttcttgaattaatttttcaatctcttcagtttttaacctttctttgtagttggttatagtaat 239  Q
    ||||||||||||| |||||||   |||||||||||||||||| ||| ||||||| ||| || ||| |    |||||||||||||| |||||||| |||||    
T  6788706 ttaggaatttcttatcttcaacgaggtaattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaat 6788805  T
Q  240 ctcatt 245  Q
    ||||||    
T  6788806 ctcatt 6788811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 8646067 - 8646114
Alignment:
Q  133 gccttccttaggaatttcttgtcttcaatatggtaattctcagcttct 180  Q
    |||||||||||||||||||  ||||||||| ||||||| |||||||||    
T  8646067 gccttccttaggaatttctcatcttcaatacggtaattttcagcttct 8646114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 27849127 - 27849012
Alignment:
Q  141 taggaatttcttgtcttcaatatggtaattctcagcttcttgaattaatttttcaatctcttcagtttttaacctttctttgtagttggttatagtaatc 240  Q
    |||||||||||  ||||||  | |||  ||||||||||||||||| || |||| ||| ||||| |||  || |||||||||||| || || ||  |||||    
T  27849127 taggaatttctcatcttcatcacggtggttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaattagtaattataatc 27849028  T
Q  241 tcatttgaactgccag 256  Q
    ||||||| ||||||||    
T  27849027 tcatttgtactgccag 27849012  T

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