View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15164_high_2 (Length: 647)
Name: NF15164_high_2
Description: NF15164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15164_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 331 - 626
Target Start/End: Original strand, 43336081 - 43336384
Alignment:
| Q |
331 |
agaagtatagatagcaaataaagaagaaaagtattaggagtgttcatcactccacacttgcataaacaacataaaaagctgtctgtgtcttaaatcttaa |
430 |
Q |
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| T |
43336081 |
agaagtatagatagcaaataaagaagaaaagtattaggagtgttcatcacttcacacttgcacagacaacataaaaagctggctgtgtcttaaatcttaa |
43336180 |
T |
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| Q |
431 |
ttgttgaacttgacatggacttggactgagtctgactgaacacgccactaatcactcgtttgcaaccattttctaactcaacttggaaaacacgtatcaa |
530 |
Q |
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| T |
43336181 |
ttgttgaacttgacatggacttggactgagtctgactgaacacgccactaatcactcgtttgcaaccattttctaactcaacttggaaaacacgtatcaa |
43336280 |
T |
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| Q |
531 |
cattaactttcctttacatgaagtatgagaagaacaaga--------gtgaagcatgtaaaaacacattaataagattcaatttattgtcctaaccaggg |
622 |
Q |
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| T |
43336281 |
cattaactttccatgccatgaagtatgagaagaacaagagtgaacatgtgaagcatgtaaaaacacattaataagattcaatttattgtcctaactaggg |
43336380 |
T |
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| Q |
623 |
tcgt |
626 |
Q |
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|||| |
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| T |
43336381 |
tcgt |
43336384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 43340664 - 43340743
Alignment:
| Q |
13 |
agcagagacaaagacataggacagaacaaaaacaatagtaggaaagtggttgtgtaatcatacctgatcatgttcatgtt |
92 |
Q |
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|||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| |
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| T |
43340664 |
agcaaagacaaaaccataggacagaacaaaaacaagagtagtaaagtggttgtgtattcatacctgagcatgttcatgtt |
43340743 |
T |
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