View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15164_low_3 (Length: 257)
Name: NF15164_low_3
Description: NF15164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15164_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 12344639 - 12344433
Alignment:
| Q |
23 |
aagatagcagaaggtggagaaaggttgatttcaaggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactcaacaagaacgtg |
122 |
Q |
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| T |
12344639 |
aagatagcagaaggtggagaaaggttgatttcagggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactcaacaagaacgtg |
12344540 |
T |
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| Q |
123 |
atgagatagaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggtacttctatatttatc |
222 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344539 |
atgagattgaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggtacttctatatttatc |
12344440 |
T |
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| Q |
223 |
atctttt |
229 |
Q |
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||||||| |
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| T |
12344439 |
atctttt |
12344433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 12308904 - 12308719
Alignment:
| Q |
23 |
aagatagcagaaggtggagaaaggttgatttcaaggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactcaacaagaacgtg |
122 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12308904 |
aagataggagaaggtggagaaaggttgatttccttaaacaatttcataggacgtcaacattgggaattcgatccaaatgctggaactcaacaagaacgtg |
12308805 |
T |
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| Q |
123 |
atgagatagaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggta |
208 |
Q |
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|||||||||||||| | || |||||||||||||||| |||||||||| |||| ||| |||| ||||| ||||||||||||||| |
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| T |
12308804 |
atgagatagaaaggctacgacatgaattcaccaaaaatcgattttccaacaaacaaagtgctgatctcttcatgagaatgcaggta |
12308719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 35189200 - 35189015
Alignment:
| Q |
23 |
aagatagcagaaggtggagaaaggttgatttcaaggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactcaacaagaacgtg |
122 |
Q |
| |
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|||||||||||||| |||||| |||||||||| ||| || || || |||||||||||||||||||| ||||||||||| ||||| | | |||||| || |
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| T |
35189200 |
aagatagcagaaggaggagaagggttgatttctgtgaataactttataggacgtcaacactgggaatttgatccaaatgcaggaacaccagaagaacatg |
35189101 |
T |
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| Q |
123 |
atgagatagaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggta |
208 |
Q |
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|||||| |||||| | ||| | |||||||||||||| |||| |||| |||| |||||||||||||| ||||||||||||||| |
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| T |
35189100 |
ctgagattgaaaggctacgcattcaattcaccaaaaacagattctccatcaaacaaagttctgacctcttcatgagaatgcaggta |
35189015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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