View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15164_low_8 (Length: 213)
Name: NF15164_low_8
Description: NF15164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15164_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 24938603 - 24938415
Alignment:
| Q |
11 |
tagattatacttccaaactttgtgattattagtattaactattaagctttcaaacccattgaaagaggaaggagctgaagtcttagagagggaacttgta |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
24938603 |
tagattttacttccaaactttgtgattattagtattaactattaagctttcaaacccatcgaaagaggaaggagctgaagtcttttagagggaacttgta |
24938504 |
T |
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| Q |
111 |
atgcgtgagctgaagttgataggttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggtgaaagagaaattggt |
199 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24938503 |
atgtgtgagctgaagttgataggttggtgtggatagaccataataagaattggtagatgatttaatttaaaggtgaaagagaaattggt |
24938415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 42062898 - 42062948
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggt |
184 |
Q |
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||||||||||| |||||||||||||||||| | ||||| ||||||||||| |
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| T |
42062898 |
ttggtgtggatgaaccatgataagaattggttgttgattcaatttaaaggt |
42062948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 14360793 - 14360977
Alignment:
| Q |
18 |
tacttccaaactttgtgattattagtattaactattaagctttcaaacccattgaaagaggaaggagctgaagtcttagagagggaacttgtaatgcgtg |
117 |
Q |
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|||||| ||||| | |||||||||||||||| |||| |||||||||||||||||||| || || |||||||| | ||||||| |||| || | | |
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| T |
14360793 |
tacttcaaaactctctgattattagtattaagc-ttaa--tttcaaacccattgaaagagaaaagatatgaagtctgaaagagggaccttgcaacaagag |
14360889 |
T |
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| Q |
118 |
agctgaagttgataggtt------ggtgtggatagaccatgataagaattggtagatgatttaatttaaaggtgaaagagaaattggt |
199 |
Q |
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|| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| || | |||||||| |
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| T |
14360890 |
agataaagttgataggttatatatggtgtggatagaccatgataagaattgctagatgatttaatctaaaggtggaaaaaaaattggt |
14360977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 42482041 - 42482106
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggtgaaagagaaattggt |
199 |
Q |
| |
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||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| ||| | |||||||| |
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| T |
42482041 |
ttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggt |
42482106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 14135700 - 14135635
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggtgaaagagaaattggt |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| ||| | |||||||| |
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| T |
14135700 |
ttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggt |
14135635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 40322876 - 40322829
Alignment:
| Q |
137 |
gtgtggatagaccatgataagaattggtagatgatttaatttaaaggt |
184 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| ||| ||||||| |
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|
| T |
40322876 |
gtgtggatagaccatgataagaattgatagttgattcaatctaaaggt |
40322829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 27513513 - 27513463
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggt |
184 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| |
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| T |
27513513 |
ttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggt |
27513463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 26724183 - 26724248
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggtgaaagagaaattggt |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| ||| | |||||||| |
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|
| T |
26724183 |
ttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggt |
26724248 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 26732300 - 26732365
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggtgaaagagaaattggt |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| ||| | |||||||| |
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| T |
26732300 |
ttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattggt |
26732365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 26724603 - 26724553
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggt |
184 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
26724603 |
ttggtgtggatggaccatgataagaattggttgttgattcaatataaaggt |
26724553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 26732720 - 26732670
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggt |
184 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| |
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|
| T |
26732720 |
ttggtgtggatggaccatgataagaattggttgttgattcaatataaaggt |
26732670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 31664195 - 31664145
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggt |
184 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
31664195 |
ttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggt |
31664145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 42057202 - 42057152
Alignment:
| Q |
134 |
ttggtgtggatagaccatgataagaattggtagatgatttaatttaaaggt |
184 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
42057202 |
ttggtgtggatggaccatgataagaattggttgttgattcaatctaaaggt |
42057152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 18059203 - 18059263
Alignment:
| Q |
137 |
gtgtggatagaccatgataagaattggtagatgatttaatttaaaggtgaaagagaaattg |
197 |
Q |
| |
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|||||||| ||||||||||||||||||| | ||||| ||| ||||||| ||| | |||||| |
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|
| T |
18059203 |
gtgtggatggaccatgataagaattggttgttgattcaatctaaaggttaaaaaaaaattg |
18059263 |
T |
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