View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15164_low_9 (Length: 210)
Name: NF15164_low_9
Description: NF15164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15164_low_9 |
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| [»] scaffold0903 (1 HSPs) |
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Alignment Details
Target: scaffold0903 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 1032 - 1206
Alignment:
| Q |
18 |
agaaagaaagtgaaatggcttgtgttgaagttaatactcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggtt |
117 |
Q |
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| T |
1032 |
agaaagaaagtgaaatggcttgtgttgaagttaatactcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggtt |
1131 |
T |
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| Q |
118 |
aattgtatgtgttatgtcaacaagtgttgtattgtgttatgagtttactctaatgtattgtgaatcaaagttaac |
192 |
Q |
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| T |
1132 |
aattgtatgtgttaagttaacaagtgttgtattgtgttatgagtttactctaatgtattgtgaatcaaagttaac |
1206 |
T |
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Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 21717452 - 21717626
Alignment:
| Q |
18 |
agaaagaaagtgaaatggcttgtgttgaagttaatactcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21717452 |
agaaagaaagtgaaatggcttgtgttgaagttaattctcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggtt |
21717551 |
T |
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| Q |
118 |
aattgtatgtgttatgtcaacaagtgttgtattgtgttatgagtttactctaatgtattgtgaatcaaagttaac |
192 |
Q |
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| T |
21717552 |
aattgtatgtgttaagttaacaagtgttgtattgtgttatgagttcactttaatgtatattgaatcaaagttaac |
21717626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 20656192 - 20656147
Alignment:
| Q |
55 |
tcagttggcttgtgtttgtattgtatgttaagaa-ttgatgtaatg |
99 |
Q |
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| T |
20656192 |
tcagttggcttttgtttggattgtatgttaagaatttgatgtaatg |
20656147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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