View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15165_high_10 (Length: 285)
Name: NF15165_high_10
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15165_high_10 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 2156714 - 2156997
Alignment:
| Q |
1 |
gtgattaatttcagaaaatttagcagcgcgccgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaaga |
100 |
Q |
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|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
2156714 |
gtgactaattccagaaaatttagcagcgctccgttgaggacaaagaaattgttcaagtgactatttatccagtaataacatacttgatgttaataaaaga |
2156813 |
T |
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| Q |
101 |
tcctttacatgaaggttggctagagatttagtgtaaaaatactaagttgataatgagaatattgcaacttttttggatttgattcgatggatgtttatca |
200 |
Q |
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| T |
2156814 |
tcctttacacgaaggttggcttgagatttcgcgtaaaaatactaagttgataagaagaatattgcaacctttttggatttgattcgat-gatgtttatca |
2156912 |
T |
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| Q |
201 |
ttacacacatgaaggagtagacgtctgagatgaaaggggttcttctaattttttgcgtgctgtcttccttacaaccaacttccct |
285 |
Q |
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| T |
2156913 |
ttacacacatgaaggagtagccgtatgagatgaaagggcttcttataattttttgcgtgacgtcttcattagaaccaacttccct |
2156997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 8924 - 8711
Alignment:
| Q |
32 |
cgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttag |
131 |
Q |
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| T |
8924 |
cgttgaggacaaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcg |
8825 |
T |
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| Q |
132 |
tgtaaaaata---------ctaagttgataatgagaatattgcaa-cttttttggatttgattcgatggatgtttatcattacacacatgaaggagtaga |
221 |
Q |
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| T |
8824 |
tgtaaaaatactagtcccgctaagttgataatgagaatattgcaatcttttttggatttgattccatggatgtttatcattatacacataaaggaggagc |
8725 |
T |
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| Q |
222 |
cgtctgagatgaaa |
235 |
Q |
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||| |||||||||| |
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| T |
8724 |
cgtatgagatgaaa |
8711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 18179926 - 18179714
Alignment:
| Q |
32 |
cgttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttag |
131 |
Q |
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| T |
18179926 |
cgttgaggacaaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcg |
18179827 |
T |
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| Q |
132 |
tgtaaaaata---------ctaagttgataatgagaatattgcaacttttttggatttgattcgatggatgtttatcattacacacatgaaggagtagac |
222 |
Q |
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| T |
18179826 |
tgtaaaaatactagtcccgctaagttgataatgagaatattgcaatctttttggatttgattccatggatgtttatcattatacacataaaggaggagcc |
18179727 |
T |
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| Q |
223 |
gtctgagatgaaa |
235 |
Q |
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| T |
18179726 |
gtatgagatgaaa |
18179714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 4639202 - 4639405
Alignment:
| Q |
41 |
caaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaat |
140 |
Q |
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| T |
4639202 |
caaagaaattgttgaagtgactatttatccagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaat |
4639301 |
T |
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| Q |
141 |
a---------ctaagttgataatgagaatattgcaacttttttggatttgattcgatggatgtttatcattacacacatgaaggagtagacgtctgagat |
231 |
Q |
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| T |
4639302 |
actagtcccgctaagttgataatgagaatattgcaatctttttggatttgattccatggatgtttatcattatacacataaaggaggagccgtatgagat |
4639401 |
T |
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| Q |
232 |
gaaa |
235 |
Q |
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|||| |
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| T |
4639402 |
gaaa |
4639405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 46144377 - 46144270
Alignment:
| Q |
37 |
aggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaa |
136 |
Q |
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||||||||||||||||| || ||||||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
46144377 |
aggacaaagaaattgttgaagtgactatttatgcagtaataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaa |
46144278 |
T |
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| Q |
137 |
aaatacta |
144 |
Q |
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|||||||| |
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| T |
46144277 |
aaatacta |
46144270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 14962693 - 14962762
Alignment:
| Q |
142 |
ctaagttgataatgagaatattgcaa-cttttttggatttgattcgatggatgtttatcattacacacat |
210 |
Q |
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| T |
14962693 |
ctaagttgatgatgagaatgttgtaatcttttttggatttgattcgattgatgcttatcattacacacat |
14962762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 14962550 - 14962624
Alignment:
| Q |
34 |
ttgaggacaaagaaattgttcaattgactatttatccaataataacatacttgatattaataaaagatcctttac |
108 |
Q |
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| T |
14962550 |
ttgaggacaaggaaatttttgaagtgactatttatcgagtaataacattcttgatcttaataaaagattctttac |
14962624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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