View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15165_high_2 (Length: 428)

Name: NF15165_high_2
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15165_high_2
NF15165_high_2
[»] chr1 (9 HSPs)
chr1 (24-367)||(8016214-8016560)
chr1 (248-305)||(46252676-46252733)
chr1 (270-307)||(1565551-1565588)
chr1 (248-285)||(3223706-3223743)
chr1 (250-303)||(5886990-5887043)
chr1 (358-387)||(8016160-8016189)
chr1 (248-305)||(10809364-10809421)
chr1 (259-316)||(38503470-38503527)
chr1 (251-287)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (248-305)||(3528822-3528879)
chr6 (248-297)||(281842-281891)
chr6 (244-285)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (248-304)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (251-305)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (259-305)||(35379021-35379067)
chr2 (251-305)||(44443340-44443394)
chr2 (248-305)||(43199778-43199835)
chr2 (245-305)||(43910990-43911050)
[»] chr8 (2 HSPs)
chr8 (44-81)||(4577008-4577045)
chr8 (248-305)||(7714261-7714318)
[»] chr3 (2 HSPs)
chr3 (182-215)||(1288764-1288797)
chr3 (253-305)||(41633379-41633431)
[»] chr4 (1 HSPs)
chr4 (186-218)||(38336816-38336848)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 8016560 - 8016214
Alignment:
Q  24 ataggaatgagaaagggttgttttatgcattggatcttggaggaacaaactttcgtgtgttgagggtacaattaggtggcaaagatgatcgtgtcattga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016560 ataggaatgagaaagggttgttttatgcattggatcttggaggaacaaactttcgtgtgttgagggtacaattaggtggcaaagatgatcgtgtcattga 8016461  T
Q  124 tgttgactttgatcaagttgctatacctcatgatctaatgtttgctacatccgaggttagtttgttttgattgacttatttgagctt---atcaattgtc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||   ||||||||||    
T  8016460 tgttgactttgatcaagttgctatacctcatgatctaatgtttgctacgtccgaggttagtttgttttgattgacttatttgagattatcatcaattgtc 8016361  T
Q  221 tcgaatatttatgagactggccaggagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaactcat 320  Q
    | ||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8016360 ttgaatatttatgagactgtccgggagaacttatgacatgttcataacttgttttcagcttattttcctaagctctccaagatagataacagaaactcat 8016261  T
Q  321 atgaaaacaataactccattttattttttgttatagaaaaatggctt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8016260 atgaaaacaataactccattttattttttgttatagaaaaatggctt 8016214  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 46252676 - 46252733
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    ||||||||| ||||| |||| |||||||||| |||||||| | |||||||||||||||    
T  46252676 aacttatgacatgttcataagttgttttcaggttattttcataagctctccaagatag 46252733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 1565551 - 1565588
Alignment:
Q  270 tgttttcagcttattttcctgagctctccaagatagat 307  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  1565551 tgttttcagcttattttcatgagctctccaaaatagat 1565588  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 3223743 - 3223706
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattt 285  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  3223743 aacttatgacatgtttataagttgttttcagcttattt 3223706  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  250 cttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagat 303  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || ||||||||||    
T  5886990 cttatgacatgttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 8016189 - 8016160
Alignment:
Q  358 aaaatggctttgcatgttaaagctttgatg 387  Q
    ||||||||||||||||||||||||||||||    
T  8016189 aaaatggctttgcatgttaaagctttgatg 8016160  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 10809421 - 10809364
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    ||||||||| ||||||||||  |||||||||||||||||| | || ||||||| ||||    
T  10809421 aacttatgacatgtttataatatgttttcagcttattttcataagttctccaatatag 10809364  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 38503470 - 38503527
Alignment:
Q  259 tgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaac 316  Q
    |||| |||| ||||||||||||||||||| | || |||||||||||| ||||| ||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaac 38503527  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 29635420 - 29635384
Alignment:
Q  251 ttatgaaatgtttataacttgttttcagcttattttc 287  Q
    |||||| |||||||||| |||||||||||||||||||    
T  29635420 ttatgacatgtttataagttgttttcagcttattttc 29635384  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 3528879 - 3528822
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    ||||||||| ||||  |||||||||||||| ||||||||| | |||||||||||||||    
T  3528879 aacttatgacatgtccataacttgttttcatcttattttcataagctctccaagatag 3528822  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 281842 - 281891
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctc 297  Q
    ||||||||| |||| ||||| ||||||||||||||||| | |||||||||    
T  281842 aacttatgacatgtctataagttgttttcagcttatttccatgagctctc 281891  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 6537027 - 6536986
Alignment:
Q  244 ggagaacttatgaaatgtttataacttgttttcagcttattt 285  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  6537027 ggagaacttatgacatgttcataagttgttttcagcttattt 6536986  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 25670580 - 25670636
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagata 304  Q
    ||||||||| ||||| |||| |||||||||||||||||||   ||||||||||||||    
T  25670580 aacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagata 25670636  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 11707128 - 11707074
Alignment:
Q  251 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    |||||| |||||||||| |||||||||||||||||||   |||||| ||||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatag 11707074  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 35379021 - 35379067
Alignment:
Q  259 tgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    |||| |||| ||||||||||||||||||| | |||||||||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatag 35379067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 44443394 - 44443340
Alignment:
Q  251 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    |||||||||||| |||| ||||||||||||||||||| |  |||||| |||||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatag 44443340  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 43199778 - 43199835
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    ||||| ||| |||||||||| |||||||||||||| |||| | ||| |||||||||||    
T  43199778 aacttgtgacatgtttataagttgttttcagcttaatttcataagccctccaagatag 43199835  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 43910990 - 43911050
Alignment:
Q  245 gagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||   |||| ||||||||||    
T  43910990 gagaacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatag 43911050  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 4577045 - 4577008
Alignment:
Q  44 ttttatgcattggatcttggaggaacaaactttcgtgt 81  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  4577045 ttttatgcattggaccttggaggaactaactttcgtgt 4577008  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 7714318 - 7714261
Alignment:
Q  248 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    ||||||||||||||  || |  |||||||| ||||||||| |||||||||||||||||    
T  7714318 aacttatgaaatgtcgatgagctgttttcaacttattttcatgagctctccaagatag 7714261  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 1288764 - 1288797
Alignment:
Q  182 agtttgttttgattgacttatttgagcttatcaa 215  Q
    ||||||||| ||||||||||||||||||||||||    
T  1288764 agtttgtttggattgacttatttgagcttatcaa 1288797  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 41633431 - 41633379
Alignment:
Q  253 atgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 305  Q
    |||| |||| ||||| ||||||||||||||||||| | |||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctccaaaatag 41633379  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 38336816 - 38336848
Alignment:
Q  186 tgttttgattgacttatttgagcttatcaattg 218  Q
    |||||||||||||||||||||||||||| ||||    
T  38336816 tgttttgattgacttatttgagcttatccattg 38336848  T

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