View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15165_low_1 (Length: 507)
Name: NF15165_low_1
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15165_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 10805070 - 10805516
Alignment:
| Q |
8 |
agataatactttgaatctgattttgtggtaagatatcaaaatcataaaggtaaatcagaatgaatatgttgaaatagaggatattgaggtctgattttcc |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10805070 |
agataacactttgaatctgattttgtggtaagatatcaaaatcataaaggtaaatcagaatgaatatgttgaaatagaggatattgaggtctgattttcc |
10805169 |
T |
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| Q |
108 |
atattctataagcatatgctactaaatatagactttggtacttgcctaggtgattattattctagtgattgcttagtaaggtacttactttcnnnnnnnn |
207 |
Q |
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| T |
10805170 |
atattctataagcatatgctactaaatatagactttggtacttgcctaggtgattattattctagtgattgcttagtaaggtacttactttcaaaaaagc |
10805269 |
T |
|
| Q |
208 |
nnnnngtgatcgtcaa-----------aacttgaatttaaggtaatcacaatcacaattcacaacttgttgaaaataatgtgattgaactgttacacgga |
296 |
Q |
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||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10805270 |
aaaaagtgatattcaacgcacacacaaaacttaaatttaaggtaatcacaatcacaattcacaacttgttgaaaataatgtgattgaactgttacacgga |
10805369 |
T |
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| Q |
297 |
tctagaggatatttaatattaacgagaaactaggaaatgcatatgaaaataaaatttaaaaacatgcatgatgtatcctacaaagtacagacacataatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10805370 |
tctagaggatatttaatattaacgagaaactaggaaatgcatatgaaaataaaatttaaaaacatgcatgatgtatactacaaagtacagacacataatg |
10805469 |
T |
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| Q |
397 |
ttctcacttttggctacaaaaagtatgaaggggatgaaacaagcaaa |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10805470 |
ttctcacttttggctacaaaaagtatgaaggggatgaaacaagcaaa |
10805516 |
T |
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