View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15165_low_13 (Length: 229)
Name: NF15165_low_13
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15165_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 18079379 - 18079176
Alignment:
| Q |
1 |
atataatgagcaaagagatcatgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagcttcacttttctatcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079379 |
atataatgagcaaagagatcatgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagcttcacttttctatcagt |
18079280 |
T |
|
| Q |
101 |
ccttaaagaataacctttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18079279 |
ccttaaagaataacctttactatcatcagataaaacatcactctccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccattt |
18079180 |
T |
|
| Q |
201 |
tccc |
204 |
Q |
| |
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|||| |
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|
| T |
18079179 |
tccc |
18079176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 51479324 - 51479112
Alignment:
| Q |
1 |
atataatgagcaaagagatcatgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagctt-cacttttctatcag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||| || | |
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| T |
51479324 |
atataatgagcaaagagatcatgtgatgtcaccttaggattccgtttgttaattttttgcttcagctgttcaatgcttttagctttcacttttttaaagg |
51479225 |
T |
|
| Q |
100 |
tccttaaagaataacctttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccact |
199 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
51479224 |
tccttaaagaataacctttattatcatcagataaaacattactttccaaattcttttcactgatcagttcattctcatcaatcttaacttttttaccatt |
51479125 |
T |
|
| Q |
200 |
ttccccctcttgt |
212 |
Q |
| |
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|| ||||||||| |
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|
| T |
51479124 |
atctccctcttgt |
51479112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 51496194 - 51496084
Alignment:
| Q |
102 |
cttaaagaataacctttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccacttt |
201 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| ||| |
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| T |
51496194 |
cttaaagaatagcctttattatcatcagataaaacaccactctctgaattcttttcactgatcagttcattctcctcaatcttaacatttctaccatttt |
51496095 |
T |
|
| Q |
202 |
ccccctcttgt |
212 |
Q |
| |
|
|||| |||||| |
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|
| T |
51496094 |
ccccatcttgt |
51496084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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