View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15165_low_3 (Length: 386)
Name: NF15165_low_3
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15165_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 7092750 - 7093103
Alignment:
| Q |
15 |
aataataggtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7092750 |
aataatacgtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
7092849 |
T |
|
| Q |
115 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7092850 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
7092949 |
T |
|
| Q |
215 |
tgaaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaac |
314 |
Q |
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|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7092950 |
tggaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaac |
7093049 |
T |
|
| Q |
315 |
tttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcg |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7093050 |
tttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcg |
7093103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 7104977 - 7105330
Alignment:
| Q |
15 |
aataataggtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7104977 |
aataatacgtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
7105076 |
T |
|
| Q |
115 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105077 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
7105176 |
T |
|
| Q |
215 |
tgaaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaac |
314 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105177 |
tggaggtcagttatatcagctcccaaaacattccatctcgttgttactaattaggaaacaatttttgtcttttcctattatttattctaatttatggaac |
7105276 |
T |
|
| Q |
315 |
tttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcg |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7105277 |
tttctaatctgtgcagccaaaggattcaaaatatctttttcttgatgatggtcg |
7105330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 33407484 - 33407361
Alignment:
| Q |
109 |
aattcagctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcg |
208 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||| |||| |||| ||| | |||||||||||||||||||| |
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| T |
33407484 |
aattcagctggtctcattgagtatagagcacatcctttctggctacaaaaatactgtccatcacacgagcgcgatggtactcctcgttgttgtagctgtc |
33407385 |
T |
|
| Q |
209 |
aaagaatgaaggtcagttatatca |
232 |
Q |
| |
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| |||||| |||||||||| |||| |
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| T |
33407384 |
agagaatggaggtcagttacatca |
33407361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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