View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15165_low_5 (Length: 344)

Name: NF15165_low_5
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15165_low_5
NF15165_low_5
[»] chr1 (1 HSPs)
chr1 (30-323)||(8016578-8016871)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 8016578 - 8016871
Alignment:
Q  30 aataataaaaataacaaacaaggaagagtggatcatcagagataacatatttattagtgtatgacatacgacatacatacccggagggaagagtgtggac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016578 aataataaaaataacaaacaaggaagagtggatcatcagagataacatatttattagtgtatgacatacgacatacatacccggagggaagagtgtggac 8016677  T
Q  130 ataagttggtatcatgggaagcccgggcccatcaacggaggaaagcccagcccgcatttcagaagacattgcatcagcaacatggtgaagaagaggtaga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016678 ataagttggtatcatgggaagcccgggcccatcaacggaggaaagcccagcccgcatttcagaagacattgcatcagcaacatggtgaagaagaggtaga 8016777  T
Q  230 ggagttgcacagtcttgtttgagtttcgttaataatctcgttggtccaactgaaaccttgttggatcggacggctgttgttgatcgccgatggg 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016778 ggagttgcacagtcttgtttgagtttcgttaataatctcgttggtccaactgaaaccttgttggatcggacggctgttgttgatcgccgatggg 8016871  T

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