View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15165_low_7 (Length: 305)
Name: NF15165_low_7
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15165_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 49736538 - 49736821
Alignment:
| Q |
5 |
ttctaccgtgaaaaacagggctctcagggtgtgatccattataagaaggattagaatgcacataaattgagtaatacccttcatgtcctttgaaaaattg |
104 |
Q |
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| T |
49736538 |
ttctaccgtgaaaaacagggctctcagggtgtgatccattataagaaggattagaatgcacataaattgagtaatacacttcatgtcctttgaaaaattg |
49736637 |
T |
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| Q |
105 |
ttcccacaaaggtgccaaaaacacagcaccccttgtcaaaaacatgaatgcaacttttggaactcgttcaaatggatattcagctatttttgctgtcata |
204 |
Q |
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| T |
49736638 |
ttcccacaaaggtgccaaaaacacagcaccccttgtcaaaaacatgaatgcaacttttggaactcgttcaaatggatattcagctatttttgctgtcata |
49736737 |
T |
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| Q |
205 |
gaagctctccataacaattcttcatcatccatatcatgcataattggaggaggcttaagaaaatctttcaatcctacacgttct |
288 |
Q |
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| T |
49736738 |
gaagctctccacaacaattcttcatcatccatatcatgcataattggaggaggcttaagaaaatccttcaatcctactcgttct |
49736821 |
T |
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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 22842680 - 22842867
Alignment:
| Q |
40 |
ccattataagaaggattagaatgcacataaattgagtaatacccttcatgtcctttgaaaaattgttcccacaaaggtgccaaaaacacagcaccccttg |
139 |
Q |
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||||| ||||| ||||| || ||||| ||||||||||||||||||| ||| |||||||| |||| ||||||| ||| |||||| ||||| ||||||| |
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| T |
22842680 |
ccattgtaagatggattcgagtgcacgtaaattgagtaataccctttatgccctttgaagaatttctcccacagaggagccaaaggcacaggacccctta |
22842779 |
T |
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| Q |
140 |
tcaaaaacatgaatgcaacttttggaactcgttcaaatggatattcagctatttttgctgtcatagaagctctccataacaattcttc |
227 |
Q |
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| T |
22842780 |
ctaagaacaaaaaagccacctttggaactcgatcgaaaggatattcatttatcttaggactcaatgaagctctccataacaattcttc |
22842867 |
T |
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