View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15165_low_8 (Length: 298)
Name: NF15165_low_8
Description: NF15165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15165_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2157219 - 2156938
Alignment:
| Q |
1 |
gagacttgttgagttcccacccattttacaatgttgcataaaatgatcagataagcagagaggatcaaccgccgatgtaccaatccatcattgaagaagt |
100 |
Q |
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| T |
2157219 |
gagacttgttgagttcccacccattttaccatgttgcataaaatgatcagataagtagagaggatcaaccgccgatgtaccaatccatcattgaagaagt |
2157120 |
T |
|
| Q |
101 |
tgccaaatagaaccaaaatgagaagataaaaacagatcttccaccgattcctccaaactacaaacactgacacaa-aaaattatgttgaagaatgccacg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2157119 |
tgccaaatagaaccaaaatgagaagataaaaacagatcttccaccgattcctccaaactacaaacactgacacaaaaaaattatgttgaagaatgccacg |
2157020 |
T |
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| Q |
200 |
cacgcctatgtgagttattctttgagggaagttggttgtaaggaagacgtcacgcaaaaaattataagaagccctttcatctca |
283 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2157019 |
cacgcctatgtgagttat--tttgagggaagttggttctaatgaagacgtcacgcaaaaaattataagaagccctttcatctca |
2156938 |
T |
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